Variant report

Variant	rs61886308
Chromosome Location	chr10:95905866-95905867
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1223635	0.83[EUR][1000 genomes]
rs1343094	0.84[EUR][1000 genomes]
rs17417407	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17515035	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1776942	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2689700	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2797982	0.81[EUR][1000 genomes]
rs2797985	0.81[ASN][1000 genomes]
rs3861986	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4277037	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs58730112	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs60208943	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61886304	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61886305	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886306	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61886307	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95893800-95906000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr10:95894600-95908400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:95898200-95908000	Weak transcription	Right Atrium	heart
4	chr10:95898400-95910400	Weak transcription	Colonic Mucosa	Colon
5	chr10:95898800-95908400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr10:95902600-95906200	Weak transcription	Pancreas	Pancrea
7	chr10:95904000-95906200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:95904400-95906400	ZNF genes & repeats	Fetal Intestine Small	intestine
9	chr10:95904400-95906600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
10	chr10:95904600-95906400	ZNF genes & repeats	Fetal Muscle Leg	muscle
11	chr10:95904800-95907600	Enhancers	Aorta	Aorta
12	chr10:95904800-95912800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:95905400-95906000	ZNF genes & repeats	A549	lung
14	chr10:95905400-95906200	ZNF genes & repeats	Fetal Muscle Trunk	muscle
15	chr10:95905400-95906400	ZNF genes & repeats	Fetal Stomach	stomach
16	chr10:95905600-95906000	ZNF genes & repeats	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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