Variant report

Variant	rs2797982
Chromosome Location	chr10:95918706-95918707
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs17417407	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17515035	1.00[EUR][1000 genomes]
rs1776942	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1776946	0.84[EUR][1000 genomes]
rs2689700	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2689705	0.84[EUR][1000 genomes]
rs2764339	0.84[EUR][1000 genomes]
rs2764345	0.84[EUR][1000 genomes]
rs2797985	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3861986	0.82[EUR][1000 genomes]
rs4277037	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58730112	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60208943	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61886305	0.81[AMR][1000 genomes]
rs61886306	0.81[EUR][1000 genomes]
rs61886308	0.81[EUR][1000 genomes]
rs7082818	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036676	chr10:95851376-96103876	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95906000-95924800	Weak transcription	A549	lung
2	chr10:95906400-95930800	Weak transcription	Fetal Stomach	stomach
3	chr10:95906800-95930800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr10:95906800-95931200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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