Variant report

Variant	rs12246757
Chromosome Location	chr10:92634383-92634384
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:92629379..92632289-chr10:92632395..92635365,2	K562	blood:
2	chr10:92631710..92635669-chr10:92637980..92642007,3	K562	blood:
3	chr10:92630242..92632289-chr10:92633679..92635365,2	K562	blood:
4	chr10:92634169..92636682-chr10:92637980..92640024,2	K562	blood:
5	chr10:92633775..92636007-chr10:92639498..92641051,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000148688	Chromatin interaction
ENSG00000222305	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10785972	0.80[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];0.92[ASN][1000 genomes]
rs10881838	0.83[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs10881839	0.92[ASN][1000 genomes]
rs10881844	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186320	0.83[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs11186324	0.91[ASN][1000 genomes]
rs11186350	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11186351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597471	0.83[CEU][hapmap];0.95[CHB][hapmap];0.81[JPT][hapmap];0.92[ASN][1000 genomes]
rs11599902	0.83[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs12254390	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12259060	0.91[ASN][1000 genomes]
rs12259062	0.88[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12259401	0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs35987367	0.92[ASN][1000 genomes]
rs4520504	0.95[CHB][hapmap];0.86[JPT][hapmap];0.92[ASN][1000 genomes]
rs4522081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4568910	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4933618	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6583737	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66650915	0.92[ASN][1000 genomes]
rs7080463	0.88[ASN][1000 genomes]
rs7082401	0.91[ASN][1000 genomes]
rs7087400	0.95[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7089472	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7101301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7896973	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7900048	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7905446	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7906960	0.91[ASN][1000 genomes]
rs7909232	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632400-92634800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr10:92632400-92647800	Weak transcription	Aorta	Aorta
3	chr10:92632600-92638200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:92632800-92634600	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:92632800-92634600	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr10:92632800-92635400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr10:92632800-92635400	Weak transcription	Fetal Intestine Large	intestine
8	chr10:92632800-92635400	Weak transcription	Fetal Kidney	kidney
9	chr10:92632800-92635400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr10:92632800-92635400	Weak transcription	Placenta	Placenta
11	chr10:92632800-92635600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:92632800-92635600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:92632800-92635800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:92632800-92635800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:92632800-92635800	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr10:92632800-92635800	Weak transcription	Left Ventricle	heart
17	chr10:92632800-92635800	Weak transcription	Lung	lung
18	chr10:92632800-92635800	Weak transcription	Pancreas	Pancrea
19	chr10:92632800-92636000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:92632800-92636000	Weak transcription	Brain Anterior Caudate	brain
21	chr10:92632800-92636000	Weak transcription	Brain Substantia Nigra	brain
22	chr10:92632800-92636000	Weak transcription	Ovary	ovary
23	chr10:92632800-92636000	Weak transcription	Spleen	Spleen
24	chr10:92632800-92646000	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr10:92632800-92646600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr10:92632800-92647600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr10:92632800-92647800	Weak transcription	Gastric	stomach
28	chr10:92632800-92651000	Weak transcription	Psoas Muscle	Psoas
29	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
30	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
32	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
33	chr10:92633000-92634400	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr10:92633000-92634600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
35	chr10:92633000-92635200	Weak transcription	Fetal Thymus	thymus
36	chr10:92633000-92635400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:92633000-92635400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr10:92633000-92635400	Weak transcription	Brain Hippocampus Middle	brain
39	chr10:92633000-92635400	Weak transcription	Fetal Muscle Leg	muscle
40	chr10:92633000-92635400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:92633000-92635600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:92633000-92635800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr10:92633000-92636000	Weak transcription	NHDF-Ad	bronchial
44	chr10:92633000-92636200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr10:92633000-92636600	Weak transcription	Fetal Intestine Small	intestine
46	chr10:92633000-92637800	Weak transcription	HSMMtube	muscle
47	chr10:92633000-92640400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
48	chr10:92633000-92640600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:92633200-92634600	Enhancers	Fetal Brain Female	brain
50	chr10:92633200-92635000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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