Variant report

Variant	rs7905446
Chromosome Location	chr10:92619161-92619162
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr10:92619098-92619556	MCF10A-Er-Src	breast:	n/a	n/a
2	TCF12	chr10:92618930-92619779	SK-N-SH	brain:	n/a	n/a
3	FOS	chr10:92618997-92619617	MCF10A-Er-Src	breast:	n/a	chr10:92619139-92619150 chr10:92619393-92619404 chr10:92619141-92619153
4	FOS	chr10:92618937-92619699	MCF10A-Er-Src	breast:	n/a	chr10:92619139-92619150 chr10:92619393-92619404 chr10:92619141-92619153
5	ATF3	chr10:92618986-92619661	HCT-116	colon:	n/a	n/a
6	JUND	chr10:92619042-92619582	Hela-S3	cervix:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
7	STAT3	chr10:92619070-92619596	MCF10A-Er-Src	breast:	n/a	n/a
8	GATA2	chr10:92619136-92619606	HUVEC	blood vessel:	n/a	n/a
9	TCF12	chr10:92618924-92619727	SK-N-SH	brain:	n/a	n/a
10	SP1	chr10:92618880-92619707	HCT-116	colon:	n/a	n/a
11	CEBPB	chr10:92619020-92619735	HCT-116	colon:	n/a	chr10:92619366-92619377
12	FOS	chr10:92619062-92619719	HUVEC	blood vessel:	n/a	chr10:92619139-92619150 chr10:92619393-92619404 chr10:92619141-92619153
13	FOS	chr10:92619103-92619654	MCF10A-Er-Src	breast:	n/a	chr10:92619139-92619150 chr10:92619393-92619404 chr10:92619141-92619153
14	JUND	chr10:92618862-92619736	HCT-116	colon:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
15	MAFK	chr10:92618979-92619483	IMR90	lung:	n/a	n/a
16	POLR2A	chr10:92619133-92619592	MCF10A-Er-Src	breast:	n/a	n/a
17	PBX3	chr10:92619039-92619710	SK-N-SH	brain:	n/a	n/a
18	PBX3	chr10:92618984-92619687	SK-N-SH	brain:	n/a	n/a
19	SP1	chr10:92618725-92619750	HCT-116	colon:	n/a	n/a
20	JUN	chr10:92619048-92619585	Hela-S3	cervix:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
21	E2F4	chr10:92618991-92619846	MCF10A-Er-Src	breast:	n/a	n/a
22	FOS	chr10:92618742-92619783	MCF10A-Er-Src	breast:	n/a	chr10:92619139-92619150 chr10:92619393-92619404 chr10:92619141-92619153
23	POLR2A	chr10:92618977-92619674	MCF10A-Er-Src	breast:	n/a	n/a
24	POLR2A	chr10:92619022-92619694	U87	brain:	n/a	n/a
25	FOSL2	chr10:92619151-92619631	SK-N-SH	brain:	n/a	n/a
26	JUND	chr10:92618835-92619717	HCT-116	colon:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
27	FOSL1	chr10:92618911-92619812	HCT-116	colon:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
28	CBX3	chr10:92618948-92619661	HCT-116	colon:	n/a	n/a
29	ATF3	chr10:92618919-92619650	HCT-116	colon:	n/a	n/a
30	FOSL1	chr10:92618834-92619780	HCT-116	colon:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
31	RCOR1	chr10:92619107-92619594	Hela-S3	cervix:	n/a	n/a
32	JUND	chr10:92618893-92619712	SK-N-SH	brain:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
33	STAT3	chr10:92618989-92619526	Hela-S3	cervix:	n/a	n/a
34	FOSL2	chr10:92618874-92619665	SK-N-SH	brain:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
35	GATA3	chr10:92618776-92619782	SK-N-SH	brain:	n/a	chr10:92618929-92618937
36	CEBPB	chr10:92619018-92619588	Hela-S3	cervix:	n/a	chr10:92619366-92619377
37	CEBPB	chr10:92618811-92619835	HCT-116	colon:	n/a	chr10:92619366-92619377
38	CEBPB	chr10:92619136-92619545	A549	lung:	n/a	chr10:92619366-92619377
39	CEBPB	chr10:92619001-92619589	IMR90	lung:	n/a	chr10:92619366-92619377
40	EP300	chr10:92619006-92619558	Hela-S3	cervix:	n/a	n/a
41	STAT3	chr10:92619115-92619635	MCF10A-Er-Src	breast:	n/a	n/a
42	JUND	chr10:92619095-92619681	SK-N-SH	brain:	n/a	chr10:92619139-92619150 chr10:92619141-92619153
43	GATA3	chr10:92618825-92619665	SK-N-SH	brain:	n/a	chr10:92618929-92618937

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:92618080..92620435-chr10:92621216..92622913,2	K562	blood:
2	chr10:92617446..92619942-chr10:92629114..92632072,2	K562	blood:

Variant related genes	Relation type
HTR7	TF binding region
ENSG00000148688	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10785972	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881838	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881839	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881844	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186320	0.90[ASN][1000 genomes]
rs11186324	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186350	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186351	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597471	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11599902	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12246757	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254390	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259060	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12259062	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12259401	0.93[ASN][1000 genomes]
rs35987367	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4520504	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4522081	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4568910	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933618	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583737	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66650915	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7080463	0.89[ASN][1000 genomes]
rs7082401	0.92[ASN][1000 genomes]
rs7087400	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089472	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101301	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896973	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7900048	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906960	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7909232	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92614800-92619200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:92618000-92619200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr10:92618000-92619400	Flanking Active TSS	HMEC	breast
4	chr10:92618000-92619600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr10:92618200-92619200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr10:92618400-92619200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:92618400-92619400	Enhancers	A549	lung
8	chr10:92618400-92619600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr10:92618400-92619600	Enhancers	HSMM	muscle
10	chr10:92618400-92620000	Enhancers	HUVEC	blood vessel
11	chr10:92618600-92619200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
12	chr10:92618600-92619200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:92618600-92619200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr10:92618600-92619600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr10:92618600-92619800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:92618600-92619800	Enhancers	NHDF-Ad	bronchial
17	chr10:92618600-92620000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:92618600-92620200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr10:92618600-92621600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr10:92618600-92621800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr10:92618800-92619200	Flanking Active TSS	Hela-S3	cervix
22	chr10:92618800-92619200	Flanking Active TSS	NHEK	skin
23	chr10:92619000-92619200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr10:92619000-92619600	Flanking Active TSS	NH-A	brain
25	chr10:92619000-92619800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:92619000-92619800	Enhancers	NHLF	lung
27	chr10:92619000-92619800	Flanking Active TSS	Osteobl	bone
28	chr10:92619000-92620200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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