Variant report

Variant	rs6583737
Chromosome Location	chr10:92620789-92620790
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RUNX3	chr10:92620590-92620908	GM12878	blood:	n/a	n/a
2	POU2F2	chr10:92620545-92620875	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
HTR7	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10785972	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881838	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881839	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10881844	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11186320	0.90[ASN][1000 genomes]
rs11186324	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186350	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186351	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11597471	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11599902	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12246757	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12259060	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12259062	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12259401	0.93[ASN][1000 genomes]
rs35987367	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4520504	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4522081	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4568910	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4933618	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66650915	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7080463	0.89[ASN][1000 genomes]
rs7082401	0.92[ASN][1000 genomes]
rs7087400	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7089472	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7101301	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896973	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7900048	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7905446	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7906960	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7909232	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92618600-92621600	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr10:92618600-92621800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:92619400-92621000	Enhancers	HMEC	breast
4	chr10:92620600-92620800	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links