Variant report

Variant	rs7900048
Chromosome Location	chr10:92656513-92656514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10785972	0.84[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs10881832	0.84[LWK][hapmap]
rs10881838	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs10881839	0.91[ASN][1000 genomes]
rs10881844	1.00[ASW][hapmap];1.00[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.91[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10881847	0.92[LWK][hapmap]
rs11186320	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.88[ASN][1000 genomes]
rs11186324	0.90[ASN][1000 genomes]
rs11186350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11186351	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11597471	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs11599902	0.84[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs12246757	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12254390	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12259060	0.90[ASN][1000 genomes]
rs12259062	0.87[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12259401	0.91[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs35987367	0.91[ASN][1000 genomes]
rs4520504	0.91[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4522081	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4568910	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4933618	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6583735	0.92[LWK][hapmap]
rs6583737	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66650915	0.91[ASN][1000 genomes]
rs7080463	0.87[ASN][1000 genomes]
rs7082401	0.90[ASN][1000 genomes]
rs7087400	0.83[CEU][hapmap];0.91[CHB][hapmap];0.86[JPT][hapmap];0.90[ASN][1000 genomes]
rs7089472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7101301	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7896973	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905446	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7906960	0.90[ASN][1000 genomes]
rs7909232	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
2	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
4	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
5	chr10:92634000-92661400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:92634400-92659000	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr10:92634400-92661800	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:92635200-92658800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
14	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
15	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:92635400-92656600	Strong transcription	Duodenum Smooth Muscle	Duodenum
17	chr10:92635400-92661000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
19	chr10:92639400-92658600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:92640800-92658800	Strong transcription	Dnd41	blood
21	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:92641000-92658600	Strong transcription	Duodenum Mucosa	Duodenum
23	chr10:92641000-92658800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr10:92643600-92658400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr10:92644200-92656600	Strong transcription	Primary T cells from cord blood	blood
26	chr10:92644400-92658400	Strong transcription	Primary hematopoietic stem cells	blood
27	chr10:92645000-92661000	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:92645400-92658800	Strong transcription	Fetal Intestine Large	intestine
30	chr10:92645600-92656800	Strong transcription	Placenta	Placenta
31	chr10:92645800-92663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:92646000-92657200	Strong transcription	Skeletal Muscle Female	skeletal muscle
33	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
34	chr10:92648400-92656800	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr10:92648400-92666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
37	chr10:92648600-92658200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr10:92648600-92663800	Weak transcription	Lung	lung
39	chr10:92648600-92667400	Weak transcription	Gastric	stomach
40	chr10:92648600-92668600	Weak transcription	Spleen	Spleen
41	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
43	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
46	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr10:92649600-92660800	Weak transcription	Fetal Stomach	stomach
48	chr10:92649600-92669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
50	chr10:92649800-92656600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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