Variant report

Variant	rs4568910
Chromosome Location	chr10:92662860-92662861
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10785972	0.81[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10881838	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs10881839	0.86[ASN][1000 genomes]
rs10881844	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11186320	0.84[CEU][hapmap];0.95[CHB][hapmap];0.84[ASN][1000 genomes]
rs11186324	0.85[ASN][1000 genomes]
rs11186350	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11186351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11597471	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs11599902	0.84[CEU][hapmap];0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs12246757	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12254390	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12259060	0.85[ASN][1000 genomes]
rs12259062	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12259401	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs35987367	0.86[ASN][1000 genomes]
rs4520504	0.95[CHB][hapmap];0.86[ASN][1000 genomes]
rs4522081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933618	1.00[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6583737	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66650915	0.86[ASN][1000 genomes]
rs7080463	0.82[ASN][1000 genomes]
rs7082401	0.85[ASN][1000 genomes]
rs7087400	0.80[CEU][hapmap];0.95[CHB][hapmap];0.85[ASN][1000 genomes]
rs7089472	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7101301	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7896973	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7900048	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7905446	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7906960	0.85[ASN][1000 genomes]
rs7909232	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92632800-92663200	Weak transcription	Colonic Mucosa	Colon
2	chr10:92632800-92665400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:92632800-92668000	Weak transcription	Esophagus	oesophagus
4	chr10:92632800-92668200	Weak transcription	Small Intestine	intestine
5	chr10:92634000-92665400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr10:92634800-92663600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:92635200-92664200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:92635200-92664400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr10:92635200-92665400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr10:92635200-92665400	Strong transcription	Fetal Thymus	thymus
11	chr10:92635200-92668200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr10:92636800-92671600	Weak transcription	Fetal Brain Male	brain
13	chr10:92640800-92671600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr10:92645200-92668000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:92645800-92663600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:92646800-92676800	Weak transcription	Right Ventricle	heart
17	chr10:92648400-92666400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
18	chr10:92648400-92684400	Weak transcription	Aorta	Aorta
19	chr10:92648600-92663800	Weak transcription	Lung	lung
20	chr10:92648600-92667400	Weak transcription	Gastric	stomach
21	chr10:92648600-92668600	Weak transcription	Spleen	Spleen
22	chr10:92648600-92669600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:92648600-92671600	Weak transcription	Fetal Intestine Small	intestine
24	chr10:92648600-92675000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr10:92648600-92679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:92648600-92681000	Weak transcription	Pancreas	Pancrea
27	chr10:92649200-92675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:92649600-92669000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:92649600-92671200	Weak transcription	Hela-S3	cervix
30	chr10:92651400-92663000	Weak transcription	Fetal Lung	lung
31	chr10:92651400-92675000	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr10:92651600-92671600	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr10:92652000-92670200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr10:92652400-92679400	Weak transcription	Psoas Muscle	Psoas
35	chr10:92653400-92671600	Weak transcription	Brain Angular Gyrus	brain
36	chr10:92653600-92669400	Weak transcription	K562	blood
37	chr10:92653600-92671600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr10:92653600-92671800	Weak transcription	HSMMtube	muscle
39	chr10:92653800-92671400	Weak transcription	Brain Hippocampus Middle	brain
40	chr10:92654000-92670600	Weak transcription	Ovary	ovary
41	chr10:92654200-92663400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr10:92654400-92672200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr10:92654600-92670400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr10:92654600-92675000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr10:92654800-92668800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
46	chr10:92654800-92671600	Weak transcription	Fetal Kidney	kidney
47	chr10:92654800-92674000	Weak transcription	Fetal Heart	heart
48	chr10:92655000-92668400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr10:92656200-92669600	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr10:92656400-92667200	Weak transcription	Brain Cingulate Gyrus	brain

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