Variant report
| Variant | rs12248059 |
|---|---|
| Chromosome Location | chr10:93158742-93158743 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:93156523..93158832-chr10:93160606..93163523,3 | K562 | blood: | |
| 2 | chr10:93153759..93158978-chr10:93165852..93170137,6 | MCF-7 | breast: | |
| 3 | chr10:93158520..93160600-chr10:93166963..93169198,3 | K562 | blood: | |
| 4 | chr10:93156857..93160458-chr10:93167698..93171945,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000165338 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs11186548 | 0.93[EUR][1000 genomes] |
| rs12244852 | 0.86[EUR][1000 genomes] |
| rs12257543 | 0.86[EUR][1000 genomes] |
| rs12266111 | 0.86[EUR][1000 genomes] |
| rs17106706 | 0.86[EUR][1000 genomes] |
| rs6583771 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs7071064 | 0.86[EUR][1000 genomes] |
| rs7081299 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7081707 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7087338 | 0.86[EUR][1000 genomes] |
| rs7894994 | 0.93[EUR][1000 genomes] |
| rs7899549 | 0.81[AFR][1000 genomes];0.80[EUR][1000 genomes] |
| rs7903943 | 0.91[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs7920590 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
