Variant report

Variant	rs7071064
Chromosome Location	chr10:93218611-93218612
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93217437..93219694-chr10:93222125..93225011,3	MCF-7	breast:
2	chr10:93216968..93219311-chr10:93231033..93233211,2	K562	blood:

Variant related genes	Relation type
ENSG00000271385	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11186548	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11186598	0.93[EUR][1000 genomes]
rs11186599	0.84[AFR][1000 genomes]
rs11186601	0.85[AFR][1000 genomes]
rs12244852	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12248059	0.86[EUR][1000 genomes]
rs12257543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12266111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106706	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106727	0.87[AFR][1000 genomes]
rs6583771	0.90[YRI][hapmap];0.80[EUR][1000 genomes]
rs7076439	0.85[AFR][1000 genomes]
rs7081299	0.86[EUR][1000 genomes]
rs7081707	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7087338	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894994	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7899549	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7903943	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7919792	1.00[CEU][hapmap]
rs7920590	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93196000-93220600	Weak transcription	Hela-S3	cervix
4	chr10:93213200-93221800	Weak transcription	HSMM	muscle
5	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
6	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
7	chr10:93213600-93222200	Weak transcription	Colon Smooth Muscle	Colon
8	chr10:93214200-93219200	Weak transcription	Fetal Lung	lung
9	chr10:93214200-93219400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:93214200-93219800	Weak transcription	Adipose Nuclei	Adipose
11	chr10:93214200-93220800	Weak transcription	NHDF-Ad	bronchial
12	chr10:93214200-93222200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:93214200-93222400	Weak transcription	Dnd41	blood
14	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
15	chr10:93214400-93219000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:93214400-93220200	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:93214400-93220200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr10:93214400-93220200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:93215200-93221800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:93215200-93222000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr10:93216400-93219400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr10:93216400-93221800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:93216800-93223400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr10:93216800-93224000	Weak transcription	Brain Anterior Caudate	brain
25	chr10:93217200-93224000	Weak transcription	K562	blood
26	chr10:93217400-93224000	Weak transcription	Fetal Brain Female	brain
27	chr10:93217800-93220000	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:93217800-93220200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr10:93218000-93219800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
31	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:93218200-93220200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr10:93218200-93220400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
35	chr10:93218400-93218800	Weak transcription	Fetal Brain Male	brain
36	chr10:93218400-93222200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr10:93218400-93223600	Weak transcription	Fetal Intestine Large	intestine
38	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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