Variant report

Variant	rs12244852
Chromosome Location	chr10:93271584-93271585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11186548	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs11186598	0.93[EUR][1000 genomes]
rs11186599	0.94[AFR][1000 genomes]
rs11186601	0.93[AFR][1000 genomes]
rs12248059	0.86[EUR][1000 genomes]
rs12257543	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12266111	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106706	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17106727	0.98[AFR][1000 genomes]
rs6583771	0.89[YRI][hapmap];0.80[EUR][1000 genomes]
rs7071064	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7076439	0.93[AFR][1000 genomes]
rs7081299	0.86[EUR][1000 genomes]
rs7081707	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7087338	1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7894994	1.00[CEU][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs7899549	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7903943	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs7919792	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs7920590	0.80[EUR][1000 genomes]

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
2	chr10:93224200-93280000	Weak transcription	Colon Smooth Muscle	Colon
3	chr10:93227800-93277400	Weak transcription	Brain Hippocampus Middle	brain
4	chr10:93227800-93280000	Weak transcription	Left Ventricle	heart
5	chr10:93228000-93279400	Weak transcription	Ovary	ovary
6	chr10:93236200-93271600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr10:93236400-93279800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:93236600-93275600	Weak transcription	Aorta	Aorta
9	chr10:93238000-93272200	Weak transcription	Brain Anterior Caudate	brain
10	chr10:93244600-93284000	Weak transcription	Esophagus	oesophagus
11	chr10:93244800-93273800	Weak transcription	Brain Germinal Matrix	brain
12	chr10:93248000-93279600	Weak transcription	Fetal Intestine Large	intestine
13	chr10:93248200-93279800	Weak transcription	Psoas Muscle	Psoas
14	chr10:93257400-93274000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr10:93258200-93273400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr10:93259000-93284400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr10:93259400-93277400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:93259600-93277400	Weak transcription	Fetal Muscle Leg	muscle
19	chr10:93260000-93273800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:93260000-93274600	Weak transcription	Fetal Brain Female	brain
21	chr10:93261400-93271600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:93262200-93281800	Weak transcription	Fetal Brain Male	brain
23	chr10:93263000-93272400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr10:93263000-93273200	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr10:93263000-93274400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr10:93263000-93277200	Weak transcription	Adipose Nuclei	Adipose
27	chr10:93263000-93277400	Weak transcription	Dnd41	blood
28	chr10:93263000-93280200	Weak transcription	Fetal Kidney	kidney
29	chr10:93263200-93272400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr10:93263200-93272800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:93263800-93275000	Weak transcription	Fetal Stomach	stomach
32	chr10:93263800-93288000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr10:93269200-93276200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr10:93269400-93279800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr10:93269600-93272200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr10:93269600-93272600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr10:93270000-93275000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
38	chr10:93270800-93277200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr10:93271000-93272800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr10:93271200-93271600	Enhancers	Fetal Lung	lung
41	chr10:93271200-93271800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr10:93271200-93271800	Enhancers	Duodenum Smooth Muscle	Duodenum
43	chr10:93271200-93272000	Enhancers	NH-A	brain
44	chr10:93271200-93272200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:93271200-93272200	Enhancers	HSMMtube	muscle
46	chr10:93271200-93272200	Enhancers	Osteobl	bone
47	chr10:93271200-93272600	Enhancers	HSMM	muscle
48	chr10:93271200-93272800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr10:93271200-93272800	Strong transcription	Cortex derived primary cultured neurospheres	brain
50	chr10:93271200-93272800	Enhancers	NHDF-Ad	bronchial

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