Variant report

Variant	rs7081707
Chromosome Location	chr10:93192960-93192961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93168341..93170273-chr10:93191758..93194718,2	MCF-7	breast:
2	chr10:93174410..93176355-chr10:93191007..93193487,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165338	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11186548	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11186599	0.81[AFR][1000 genomes]
rs12244852	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12248059	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257543	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12266111	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106706	1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17106727	0.82[AFR][1000 genomes]
rs6583771	0.89[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7071064	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7081299	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7087338	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7894994	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs7899549	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7903943	1.00[CEU][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7919792	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs7920590	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93170800-93204600	Weak transcription	Gastric	stomach
2	chr10:93171000-93195000	Weak transcription	Left Ventricle	heart
3	chr10:93171800-93203200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:93172200-93195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr10:93173200-93194800	Weak transcription	Brain Germinal Matrix	brain
6	chr10:93174600-93198000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:93175000-93204200	Weak transcription	Fetal Brain Male	brain
8	chr10:93175000-93205400	Weak transcription	Aorta	Aorta
9	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
10	chr10:93176600-93204000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:93176600-93205400	Weak transcription	Duodenum Mucosa	Duodenum
12	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr10:93176800-93196800	Weak transcription	Brain Angular Gyrus	brain
14	chr10:93176800-93199800	Weak transcription	Colon Smooth Muscle	Colon
15	chr10:93176800-93203600	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr10:93180800-93193000	Weak transcription	HUVEC	blood vessel
17	chr10:93180800-93194600	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr10:93180800-93203200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr10:93181000-93195000	Weak transcription	Hela-S3	cervix
20	chr10:93181200-93193600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:93181200-93195000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:93181200-93197000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr10:93182200-93207200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr10:93184000-93203800	Weak transcription	Brain Hippocampus Middle	brain
25	chr10:93184000-93205000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr10:93184200-93193600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr10:93184200-93195000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:93184400-93193200	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr10:93184400-93193400	Weak transcription	Osteobl	bone
30	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr10:93184600-93194000	Weak transcription	HSMM	muscle
32	chr10:93185000-93208800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
34	chr10:93186600-93193400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:93186600-93196800	Weak transcription	Dnd41	blood
36	chr10:93186600-93197800	Weak transcription	Fetal Brain Female	brain
37	chr10:93186600-93205600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:93190400-93203400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr10:93190600-93195000	Weak transcription	Fetal Intestine Large	intestine
40	chr10:93190600-93198600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr10:93190600-93204200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr10:93190800-93197000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:93191200-93198600	Weak transcription	Fetal Thymus	thymus
44	chr10:93191600-93196000	Weak transcription	Brain Substantia Nigra	brain
45	chr10:93191800-93195600	Weak transcription	Small Intestine	intestine
46	chr10:93191800-93197800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr10:93192000-93195200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:93192000-93195600	Strong transcription	Ovary	ovary
49	chr10:93192000-93198200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr10:93192000-93206600	Weak transcription	Primary B cells from cord blood	blood

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