Variant report

Variant	rs12261288
Chromosome Location	chr10:93205566-93205567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11186620	1.00[EUR][1000 genomes]
rs12241982	1.00[EUR][1000 genomes]
rs12251752	1.00[EUR][1000 genomes]
rs17106633	1.00[EUR][1000 genomes]
rs17106748	1.00[EUR][1000 genomes]
rs55959635	1.00[EUR][1000 genomes]
rs56128562	1.00[EUR][1000 genomes]
rs56131496	1.00[EUR][1000 genomes]
rs57722499	1.00[EUR][1000 genomes]
rs59996150	1.00[EUR][1000 genomes]
rs7086499	1.00[EUR][1000 genomes]
rs7100259	1.00[EUR][1000 genomes]
rs73312470	1.00[EUR][1000 genomes]
rs73314552	1.00[EUR][1000 genomes]
rs73314571	1.00[EUR][1000 genomes]
rs74149293	1.00[EUR][1000 genomes]
rs7907539	1.00[EUR][1000 genomes]
rs7923529	1.00[EUR][1000 genomes]
rs9664423	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895888	chr10:93176418-93206699	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv895889	chr10:93176418-93207971	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv895890	chr10:93176418-93219246	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv433413	chr10:93201147-93207971	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription	n/a	n/a	inside rSNPs	diseases
7	nsv551913	chr10:93201591-93207971	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	esv33149	chr10:93203538-93211658	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93175000-93208800	Weak transcription	Adipose Nuclei	Adipose
2	chr10:93176600-93212600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93182200-93207200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr10:93185000-93208800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
7	chr10:93186600-93205600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:93192000-93206600	Weak transcription	Primary B cells from cord blood	blood
9	chr10:93193600-93205600	Weak transcription	Liver	Liver
10	chr10:93194400-93205600	Weak transcription	NH-A	brain
11	chr10:93194600-93213800	Weak transcription	HUVEC	blood vessel
12	chr10:93195200-93206400	Weak transcription	HSMM	muscle
13	chr10:93195400-93207600	Weak transcription	Esophagus	oesophagus
14	chr10:93195400-93207600	Weak transcription	Fetal Intestine Large	intestine
15	chr10:93195600-93208200	Weak transcription	Fetal Muscle Leg	muscle
16	chr10:93195600-93213000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:93196000-93220600	Weak transcription	Hela-S3	cervix
18	chr10:93198400-93208400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:93203400-93206000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr10:93203600-93207600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:93204200-93205600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr10:93204400-93205600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr10:93204400-93207600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr10:93204400-93208000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr10:93204600-93205600	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr10:93204800-93205600	Enhancers	H9 Cell Line	embryonic stem cell
27	chr10:93204800-93205600	Flanking Active TSS	Fetal Lung	lung
28	chr10:93204800-93205600	Enhancers	Left Ventricle	heart
29	chr10:93204800-93205600	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr10:93204800-93205800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr10:93205000-93205800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:93205000-93206000	Strong transcription	Fetal Stomach	stomach
33	chr10:93205000-93206000	Enhancers	Psoas Muscle	Psoas
34	chr10:93205000-93206000	Enhancers	Right Atrium	heart
35	chr10:93205000-93207400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr10:93205000-93208200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr10:93205000-93208800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr10:93205000-93211800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr10:93205200-93209000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr10:93205400-93205600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr10:93205400-93205600	Enhancers	Right Ventricle	heart
42	chr10:93205400-93205800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr10:93205400-93205800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr10:93205400-93205800	ZNF genes & repeats	Aorta	Aorta
45	chr10:93205400-93205800	Strong transcription	Duodenum Mucosa	Duodenum
46	chr10:93205400-93205800	ZNF genes & repeats	Fetal Brain Female	brain
47	chr10:93205400-93205800	ZNF genes & repeats	Fetal Intestine Small	intestine
48	chr10:93205400-93205800	ZNF genes & repeats	Ovary	ovary

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