Variant report

Variant	rs11186620
Chromosome Location	chr10:93350897-93350898
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:93350580..93353004-chr10:93359204..93360922,2	K562	blood:
2	chr10:93348429..93351278-chr10:93370659..93373317,2	K562	blood:
3	chr10:93347598..93350963-chr10:93361481..93364970,4	K562	blood:
4	chr10:93346543..93348493-chr10:93350509..93352475,2	K562	blood:
5	chr10:93349706..93352465-chr10:93354064..93358504,5	K562	blood:
6	chr10:93349778..93351711-chr10:93371480..93373317,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12261288	1.00[EUR][1000 genomes]
rs17106633	1.00[EUR][1000 genomes]
rs17106748	1.00[EUR][1000 genomes]
rs55959635	1.00[EUR][1000 genomes]
rs56128562	1.00[EUR][1000 genomes]
rs56131496	1.00[EUR][1000 genomes]
rs57722499	1.00[EUR][1000 genomes]
rs59099210	1.00[EUR][1000 genomes]
rs59996150	1.00[EUR][1000 genomes]
rs7086499	1.00[EUR][1000 genomes]
rs7100259	1.00[EUR][1000 genomes]
rs74149293	1.00[EUR][1000 genomes]
rs74151705	1.00[EUR][1000 genomes]
rs74151706	1.00[EUR][1000 genomes]
rs7907539	1.00[EUR][1000 genomes]
rs7912945	1.00[EUR][1000 genomes]
rs7923529	1.00[EUR][1000 genomes]
rs9664423	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv19622	chr10:93305214-93361590	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93346400-93351400	Enhancers	Aorta	Aorta
2	chr10:93346800-93352200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr10:93346800-93352400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr10:93346800-93354600	Enhancers	Fetal Muscle Leg	muscle
5	chr10:93347000-93358800	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:93347200-93351600	Enhancers	Psoas Muscle	Psoas
7	chr10:93347400-93351800	Flanking Active TSS	Hela-S3	cervix
8	chr10:93347400-93352200	Enhancers	HUVEC	blood vessel
9	chr10:93347400-93352600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr10:93347400-93352800	Enhancers	HSMM	muscle
11	chr10:93347400-93352800	Enhancers	NHLF	lung
12	chr10:93347400-93353400	Enhancers	Ovary	ovary
13	chr10:93347400-93353800	Enhancers	Pancreas	Pancrea
14	chr10:93347400-93354400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr10:93347600-93351000	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:93347600-93351200	Enhancers	Right Ventricle	heart
17	chr10:93347600-93351800	Flanking Active TSS	A549	lung
18	chr10:93347600-93352600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:93347600-93353200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr10:93347600-93353400	Enhancers	Right Atrium	heart
21	chr10:93347600-93358800	Enhancers	Fetal Stomach	stomach
22	chr10:93348000-93351800	Enhancers	Brain Anterior Caudate	brain
23	chr10:93348200-93351400	Enhancers	Fetal Intestine Large	intestine
24	chr10:93348200-93351400	Enhancers	NHDF-Ad	bronchial
25	chr10:93348200-93351600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr10:93348200-93352000	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr10:93348200-93358800	Enhancers	Fetal Intestine Small	intestine
28	chr10:93348400-93351600	Enhancers	Adipose Nuclei	Adipose
29	chr10:93348400-93352800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:93348400-93352800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:93348600-93351600	Enhancers	Placenta	Placenta
32	chr10:93348600-93351600	Enhancers	Left Ventricle	heart
33	chr10:93348600-93352200	Enhancers	Osteobl	bone
34	chr10:93348800-93351800	Enhancers	NH-A	brain
35	chr10:93348800-93352400	Flanking Active TSS	Stomach Smooth Muscle	stomach
36	chr10:93348800-93353000	Enhancers	Stomach Mucosa	stomach
37	chr10:93349000-93351400	Enhancers	Duodenum Mucosa	Duodenum
38	chr10:93349000-93351600	Enhancers	Brain Cingulate Gyrus	brain
39	chr10:93349000-93352000	Enhancers	HepG2	liver
40	chr10:93349000-93352400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:93349000-93352400	Enhancers	Rectal Mucosa Donor 29	rectum
42	chr10:93349000-93353400	Enhancers	Fetal Muscle Trunk	muscle
43	chr10:93349000-93356200	Weak transcription	Pancreatic Islets	Pancreatic Islet
44	chr10:93349200-93351000	Enhancers	Brain Angular Gyrus	brain
45	chr10:93349200-93351400	Enhancers	Esophagus	oesophagus
46	chr10:93349200-93354800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr10:93349400-93351400	Enhancers	Lung	lung
48	chr10:93349400-93351800	Enhancers	Colonic Mucosa	Colon
49	chr10:93349400-93356200	Weak transcription	Placenta Amnion	Placenta Amnion
50	chr10:93349600-93351200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links