Variant report

Variant	rs9664423
Chromosome Location	chr10:93222023-93222024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11186620	1.00[EUR][1000 genomes]
rs12241982	1.00[EUR][1000 genomes]
rs12251752	1.00[EUR][1000 genomes]
rs12261288	1.00[EUR][1000 genomes]
rs17106633	1.00[EUR][1000 genomes]
rs17106748	1.00[EUR][1000 genomes]
rs55959635	1.00[EUR][1000 genomes]
rs56128562	1.00[EUR][1000 genomes]
rs56131496	1.00[EUR][1000 genomes]
rs57722499	1.00[EUR][1000 genomes]
rs59099210	1.00[EUR][1000 genomes]
rs59996150	1.00[EUR][1000 genomes]
rs7086499	1.00[EUR][1000 genomes]
rs7100259	1.00[EUR][1000 genomes]
rs73312470	1.00[EUR][1000 genomes]
rs73314552	1.00[EUR][1000 genomes]
rs73314571	1.00[EUR][1000 genomes]
rs74149293	1.00[EUR][1000 genomes]
rs74151705	1.00[EUR][1000 genomes]
rs74151706	1.00[EUR][1000 genomes]
rs7907539	1.00[EUR][1000 genomes]
rs7912945	1.00[EUR][1000 genomes]
rs7923529	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040403	chr10:93165819-93225036	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv895891	chr10:93176418-93269972	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93184400-93226400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:93186000-93226800	Weak transcription	Pancreas	Pancrea
3	chr10:93213200-93224200	Weak transcription	Aorta	Aorta
4	chr10:93213400-93224000	Weak transcription	Psoas Muscle	Psoas
5	chr10:93213600-93222200	Weak transcription	Colon Smooth Muscle	Colon
6	chr10:93214200-93222200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr10:93214200-93222400	Weak transcription	Dnd41	blood
8	chr10:93214200-93272000	Weak transcription	HUVEC	blood vessel
9	chr10:93216800-93223400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr10:93216800-93224000	Weak transcription	Brain Anterior Caudate	brain
11	chr10:93217200-93224000	Weak transcription	K562	blood
12	chr10:93217400-93224000	Weak transcription	Fetal Brain Female	brain
13	chr10:93218000-93224200	Weak transcription	Left Ventricle	heart
14	chr10:93218000-93230600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:93218200-93224200	Weak transcription	Esophagus	oesophagus
16	chr10:93218400-93222200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr10:93218400-93223600	Weak transcription	Fetal Intestine Large	intestine
18	chr10:93218600-93228200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:93218800-93223600	Weak transcription	Brain Germinal Matrix	brain
20	chr10:93218800-93224000	Weak transcription	NH-A	brain
21	chr10:93219000-93222400	Weak transcription	Fetal Brain Male	brain
22	chr10:93219200-93222400	Weak transcription	Fetal Kidney	kidney
23	chr10:93219400-93222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:93219600-93223200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr10:93219600-93224200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr10:93219600-93247600	Weak transcription	HSMMtube	muscle
27	chr10:93219800-93222800	Weak transcription	Fetal Muscle Leg	muscle
28	chr10:93219800-93224200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
29	chr10:93219800-93224200	Strong transcription	Adipose Nuclei	Adipose
30	chr10:93220000-93222400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr10:93220000-93222600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr10:93220000-93223200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr10:93220000-93224200	Weak transcription	Fetal Intestine Small	intestine
34	chr10:93220200-93224000	Strong transcription	HUES48 Cell Line	embryonic stem cell
35	chr10:93220200-93224800	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr10:93220200-93225000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr10:93220200-93225000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr10:93220200-93226200	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:93220200-93226800	Weak transcription	Brain Inferior Temporal Lobe	brain
40	chr10:93220400-93222200	Weak transcription	Liver	Liver
41	chr10:93220400-93223600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr10:93220400-93223800	Weak transcription	Ovary	ovary
43	chr10:93220400-93224200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr10:93220600-93223800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr10:93220600-93226600	Weak transcription	NHLF	lung
46	chr10:93220600-93226800	Weak transcription	A549	lung
47	chr10:93220600-93271400	Weak transcription	HMEC	breast
48	chr10:93220800-93222200	Strong transcription	NHDF-Ad	bronchial
49	chr10:93220800-93222600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr10:93220800-93223600	Weak transcription	Fetal Thymus	thymus

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