Variant report

Variant	rs59099210
Chromosome Location	chr10:93440245-93440246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:93439340..93443358-chr10:93444027..93446342,3	MCF-7	breast:
2	chr10:93440121..93442029-chr10:93445363..93447595,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11186620	1.00[EUR][1000 genomes]
rs17106748	1.00[EUR][1000 genomes]
rs55959635	1.00[EUR][1000 genomes]
rs56128562	1.00[EUR][1000 genomes]
rs56131496	1.00[EUR][1000 genomes]
rs57722499	1.00[EUR][1000 genomes]
rs59996150	1.00[EUR][1000 genomes]
rs7086499	1.00[EUR][1000 genomes]
rs7100259	1.00[EUR][1000 genomes]
rs74149293	1.00[EUR][1000 genomes]
rs74151705	1.00[EUR][1000 genomes]
rs74151706	1.00[EUR][1000 genomes]
rs7907539	1.00[EUR][1000 genomes]
rs7912945	1.00[EUR][1000 genomes]
rs7923529	1.00[EUR][1000 genomes]
rs9664423	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895892	chr10:93432632-93470167	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:93427600-93448800	Weak transcription	Liver	Liver
4	chr10:93432400-93442800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:93432600-93441400	Weak transcription	HSMM	muscle
6	chr10:93432600-93441400	Weak transcription	NHLF	lung
7	chr10:93433000-93441200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:93436400-93441400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:93438000-93441200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr10:93438200-93441400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:93439200-93444600	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:93439400-93449600	Weak transcription	Aorta	Aorta
13	chr10:93440000-93442000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:93440000-93442200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:93440000-93442600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:93440000-93443400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr10:93440000-93443400	Enhancers	NHEK	skin
18	chr10:93440000-93443600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr10:93440000-93444400	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr10:93440200-93441200	Weak transcription	Brain Germinal Matrix	brain
21	chr10:93440200-93442000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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