Variant report

Variant	rs56128562
Chromosome Location	chr10:93431215-93431216
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr10:93431165-93431661	T-47D	breast:	n/a	n/a
2	ESR1	chr10:93431125-93431580	ECC-1	luminal epithelium:	n/a	n/a
3	NR2F2	chr10:93431132-93431734	MCF-7	breast:	n/a	chr10:93431447-93431462
4	SIN3AK20	chr10:93431016-93432569	MCF-7	breast:	n/a	n/a
5	GATA3	chr10:93431140-93432484	MCF-7	breast:	n/a	chr10:93432217-93432227
6	GATA3	chr10:93431073-93431719	MCF-7	breast:	n/a	chr10:93431083-93431094
7	EP300	chr10:93431113-93431713	MCF-7	breast:	n/a	n/a
8	ESR1	chr10:93431195-93431666	T-47D	breast:	n/a	n/a
9	ESR1	chr10:93431177-93431639	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:93431074..93433600-chr10:93435217..93437331,2	MCF-7	breast:
2	chr10:93429753..93431431-chr10:93432536..93434439,2	MCF-7	breast:
3	chr10:93428056..93430246-chr10:93430391..93432462,3	MCF-7	breast:

Variant related genes	Relation type
GAPDHP28	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11186620	1.00[EUR][1000 genomes]
rs12261288	1.00[EUR][1000 genomes]
rs17106748	1.00[EUR][1000 genomes]
rs55959635	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56131496	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57722499	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59099210	1.00[EUR][1000 genomes]
rs59996150	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7086499	1.00[EUR][1000 genomes]
rs7100259	1.00[EUR][1000 genomes]
rs74149293	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74151705	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74151706	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7907539	1.00[EUR][1000 genomes]
rs7912945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7923529	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9664423	1.00[EUR][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:93419200-93431400	Weak transcription	Psoas Muscle	Psoas
2	chr10:93424800-93449800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:93425800-93432000	Weak transcription	Osteobl	bone
4	chr10:93427000-93443400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr10:93427600-93431400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:93427600-93448800	Weak transcription	Liver	Liver
7	chr10:93429000-93431400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr10:93429200-93431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:93429200-93431800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:93429400-93431800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:93429800-93431600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:93430000-93431400	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr10:93430000-93431800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:93430800-93431800	Enhancers	Hela-S3	cervix
15	chr10:93430800-93432000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:93430800-93432400	Enhancers	Fetal Heart	heart
17	chr10:93430800-93432400	Enhancers	Left Ventricle	heart
18	chr10:93431000-93431800	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr10:93431200-93432000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr10:93431200-93432000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr10:93431200-93432200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr10:93431200-93432600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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