Variant report

Variant	rs12261332
Chromosome Location	chr10:97850096-97850097
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:476)
CpG islands
(count:122)
Chromatin interactive
region (count:18)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:476 , 50 per page) page: 1 2 3 4 5 6 7 ... 10

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CHD2	chr10:97849582-97850260	K562	blood:	n/a	chr10:97849619-97849629
2	ARID3A	chr10:97849359-97850129	K562	blood:	n/a	n/a
3	PAX5	chr10:97849273-97850269	GM12878	blood:	n/a	n/a
4	BCL3	chr10:97849368-97850350	A549	lung:	n/a	chr10:97850090-97850099
5	TEAD4	chr10:97849606-97850395	HepG2	liver:	n/a	n/a
6	ATF2	chr10:97849254-97850435	GM12878	blood:	n/a	n/a
7	BATF	chr10:97849805-97850246	GM12878	blood:	n/a	n/a
8	POLR2A	chr10:97849322-97850780	HL-60	blood:	n/a	n/a
9	STAT5A	chr10:97849476-97850232	K562	blood:	n/a	chr10:97850054-97850063 chr10:97850049-97850069 chr10:97850055-97850064 chr10:97850055-97850063
10	POLR2A	chr10:97849296-97850318	K562	blood:	n/a	n/a
11	FOS	chr10:97849931-97850163	MCF10A-Er-Src	breast:	n/a	chr10:97850088-97850097
12	POLR2A	chr10:97848882-97850709	HepG2	liver:	n/a	n/a
13	PML	chr10:97849266-97850359	K562	blood:	n/a	n/a
14	TBP	chr10:97849373-97850397	GM12878	blood:	n/a	n/a
15	SIX5	chr10:97849852-97850188	GM12878	blood:	n/a	n/a
16	YY1	chr10:97849345-97850295	SK-N-SH_RA	brain:	n/a	n/a
17	TBP	chr10:97849366-97850279	HepG2	liver:	n/a	n/a
18	TAF1	chr10:97849638-97850150	GM12891	blood:	n/a	n/a
19	E2F6	chr10:97849909-97850194	K562	blood:	n/a	n/a
20	STAT5A	chr10:97849569-97850311	GM12878	blood:	n/a	chr10:97850054-97850063 chr10:97850049-97850069 chr10:97850055-97850064 chr10:97850055-97850063
21	TAF1	chr10:97849371-97850213	K562	blood:	n/a	n/a
22	POLR2A	chr10:97849301-97850700	GM12878	blood:	n/a	n/a
23	UBTF	chr10:97849368-97850120	K562	blood:	n/a	n/a
24	GABPA	chr10:97849865-97850190	Hela-S3	cervix:	n/a	n/a
25	POLR2A	chr10:97849329-97850294	GM12891	blood:	n/a	n/a
26	POLR2A	chr10:97849301-97850587	A549	lung:	n/a	n/a
27	EP300	chr10:97849807-97850226	HepG2	liver:	n/a	n/a
28	STAT3	chr10:97849522-97850193	MCF10A-Er-Src	breast:	n/a	chr10:97850054-97850063 chr10:97850053-97850064 chr10:97850049-97850069 chr10:97850055-97850064 chr10:97850055-97850063
29	E2F6	chr10:97849364-97850534	K562	blood:	n/a	chr10:97849674-97849681 chr10:97849674-97849681 chr10:97849674-97849681
30	GABPA	chr10:97849006-97850635	MCF-7	breast:	n/a	n/a
31	SIX5	chr10:97849277-97850401	A549	lung:	n/a	n/a
32	TCF12	chr10:97849889-97850214	GM12878	blood:	n/a	n/a
33	GABPA	chr10:97849218-97850522	HL-60	blood:	n/a	n/a
34	ELK4	chr10:97849576-97850212	HEK293	kidney:	n/a	chr10:97849955-97849966 chr10:97849993-97850004
35	MAX	chr10:97849283-97850409	ECC-1	luminal epithelium:	n/a	chr10:97850384-97850393
36	YY1	chr10:97849489-97850362	NT2-D1	testis:	n/a	n/a
37	ETS1	chr10:97849436-97850255	GM12878	blood:	n/a	chr10:97850058-97850068
38	PBX3	chr10:97849830-97850131	GM12878	blood:	n/a	n/a
39	POLR2A	chr10:97849326-97850284	A549	lung:	n/a	n/a
40	SIN3AK20	chr10:97849736-97850380	A549	lung:	n/a	n/a
41	YY1	chr10:97849340-97850176	HepG2	liver:	n/a	n/a
42	POLR2A	chr10:97849386-97850214	A549	lung:	n/a	n/a
43	BHLHE40	chr10:97849366-97850596	HepG2	liver:	n/a	chr10:97850079-97850095
44	BRCA1	chr10:97849767-97850183	HepG2	liver:	n/a	n/a
45	MAZ	chr10:97849343-97850359	K562	blood:	n/a	n/a
46	RELA	chr10:97849387-97850437	GM18951	blood:	n/a	n/a
47	TAF1	chr10:97849221-97850499	ECC-1	luminal epithelium:	n/a	n/a
48	TAF1	chr10:97849278-97850399	A549	lung:	n/a	n/a
49	POLR2A	chr10:97849242-97850679	GM12892	blood:	n/a	n/a
50	ATF3	chr10:97849651-97850218	A549	lung:	n/a	chr10:97850089-97850098

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:97850047-97850097	Jurkat	blood:	n/a
2	chr10:97850094-97850144	HRCEpiC	kidney:	n/a
3	chr10:97850094-97850144	SK-N-SH	brain:	n/a
4	chr10:97850047-97850097	HRCEpiC	kidney:	n/a
5	chr10:97850094-97850144	Caco-2	colon:	n/a
6	chr10:97850047-97850097	SKMC	muscle:	n/a
7	chr10:97850094-97850144	PANC-1	pancreas:	n/a
8	chr10:97850047-97850097	AG04450	lung:	fetal
9	chr10:97850047-97850097	AG04449	skin:	fetal
10	chr10:97850094-97850144	HPAEpiC	pulmonary alveolar:	n/a
11	chr10:97850094-97850144	AG10803	skin:	n/a
12	chr10:97850047-97850097	MCF-7	breast:	n/a
13	chr10:97850047-97850097	AG09319	gingival:	n/a
14	chr10:97850094-97850144	GM06990	blood:	n/a
15	chr10:97850094-97850144	HAEpiC	amniotic membrane:	n/a
16	chr10:97850094-97850144	AG09309	skin:	n/a
17	chr10:97850047-97850097	HIPEpiC	eye:	n/a
18	chr10:97850047-97850097	HEK293	kidney:	embryo
19	chr10:97850094-97850144	NHDF-neo	bronchial:	n/a
20	chr10:97850047-97850097	ProgFib	skin:	n/a
21	chr10:97850047-97850097	HCF	heart:	n/a
22	chr10:97850094-97850144	K562	blood:	n/a
23	chr10:97850094-97850144	NH-A	brain:	n/a
24	chr10:97850094-97850144	GM12892	blood:	n/a
25	chr10:97850047-97850097	AoSMC	blood vessel:	n/a
26	chr10:97850094-97850144	AG04449	skin:	fetal
27	chr10:97850094-97850144	HRE	kidney:	n/a
28	chr10:97850047-97850097	Hela-S3	cervix:	n/a
29	chr10:97850047-97850097	NHBE	bronchial:	n/a
30	chr10:97850094-97850144	ProgFib	skin:	n/a
31	chr10:97850047-97850097	PrEC	prostate:	n/a
32	chr10:97850094-97850144	SKMC	muscle:	n/a
33	chr10:97850047-97850097	PANC-1	pancreas:	n/a
34	chr10:97850094-97850144	GM19239	blood:	n/a
35	chr10:97850094-97850144	CMK	blood:	n/a
36	chr10:97850094-97850144	GM12878	blood:	n/a
37	chr10:97850047-97850097	HCT-116	colon:	n/a
38	chr10:97850047-97850097	HEEpiC	esophagus:	n/a
39	chr10:97850094-97850144	H1-hESC	embryonic stem cell:	embryo
40	chr10:97850094-97850144	AG04450	lung:	fetal
41	chr10:97850094-97850144	Hepatocyte	liver:	n/a
42	chr10:97850047-97850097	SAEC	small airway:	n/a
43	chr10:97850094-97850144	Jurkat	blood:	n/a
44	chr10:97850047-97850097	NT2-D1	testis:	n/a
45	chr10:97850094-97850144	SAEC	small airway:	n/a
46	chr10:97850094-97850144	ovcar-3	ovarian:	n/a
47	chr10:97850094-97850144	BJ	skin:	n/a
48	chr10:97850047-97850097	HepG2	liver:	n/a
49	chr10:97850047-97850097	NB4	blood:	n/a
50	chr10:97850094-97850144	PFSK-1	brain:	n/a

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97849316..97850266-chr10:97888828..97890559,6	MCF-7	breast:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr1:180991526..180992387-chr10:97849546..97850515,2	Hela-S3	cervix:
4	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:
5	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
6	chr10:97849137..97850103-chr16:88729017..88729956,2	Hela-S3	cervix:
7	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
8	chr10:97849403..97850506-chr10:97889252..97890588,8	NB4	blood:
9	chr10:97849924..97850474-chr10:97889791..97890684,2	MCF-7	breast:
10	chr10:97849360..97850496-chr10:97889363..97891052,12	MCF-7	breast:
11	chr10:97848840..97850347-chr10:98030578..98032838,2	MCF-7	breast:
12	chr10:97803257..97805604-chr10:97849531..97852092,3	MCF-7	breast:
13	chr10:97849703..97850208-chr11:68038903..68039449,2	Hela-S3	cervix:
14	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
15	chr1:161719154..161719824-chr10:97849699..97850320,2	Hela-S3	cervix:
16	chr10:97849709..97850473-chr10:97889478..97890662,4	HCT-116	colon:
17	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
18	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-4	chr10:97849288-97850240	NONHSAT015791

No data

Variant related genes	Relation type
ENTPD1-AS1	TF binding region
ENTPD1-AS1	CpG island
ENSG00000107443	Chromatin interaction
ENSG00000200728	Chromatin interaction
ENSG00000171067	Chromatin interaction
ENSG00000260630	Chromatin interaction
ENSG00000167508	Chromatin interaction
ENSG00000081721	Chromatin interaction
ENSG00000226688	Chromatin interaction
ENSG00000135823	Chromatin interaction
ENSG00000095585	Chromatin interaction
ENSG00000177853	Chromatin interaction

rs_ID	r²[population]
rs11188592	0.82[ASN][1000 genomes]
rs11188600	0.93[AFR][1000 genomes]
rs1172942	0.91[AFR][1000 genomes]
rs1172944	0.90[AFR][1000 genomes]
rs1172945	0.88[AFR][1000 genomes]
rs1172949	0.88[AFR][1000 genomes]
rs12261029	0.88[ASN][1000 genomes]
rs12263592	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12414619	0.82[ASN][1000 genomes]
rs1336456	0.82[ASN][1000 genomes]
rs1981151	0.82[ASN][1000 genomes]
rs2125061	0.88[AFR][1000 genomes]
rs2484914	0.90[AFR][1000 genomes]
rs2484915	0.90[AFR][1000 genomes]
rs41291599	0.82[ASN][1000 genomes]
rs4918985	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs7087644	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97848400-97850200	Active TSS	GM12878-XiMat	blood
2	chr10:97848400-97850200	Active TSS	K562	blood
3	chr10:97849000-97850200	Active TSS	iPS-15b Cell Line	embryonic stem cell
4	chr10:97849000-97850200	Active TSS	Primary hematopoietic stem cells	blood
5	chr10:97849000-97850200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr10:97849000-97850200	Active TSS	Liver	Liver
7	chr10:97849000-97850200	Active TSS	Brain Substantia Nigra	brain
8	chr10:97849000-97850200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr10:97849000-97850200	Active TSS	Fetal Intestine Large	intestine
10	chr10:97849000-97850200	Active TSS	Stomach Smooth Muscle	stomach
11	chr10:97849000-97850200	Active TSS	A549	lung
12	chr10:97849000-97850200	Active TSS	NHEK	skin
13	chr10:97849000-97850400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr10:97849000-97850400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr10:97849000-97850400	Active TSS	Fetal Brain Female	brain
16	chr10:97849000-97850400	Active TSS	Fetal Kidney	kidney
17	chr10:97849000-97850400	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr10:97849000-97850600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:97849000-97850600	Active TSS	HSMMtube	muscle
20	chr10:97849000-97850800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr10:97849000-97850800	Active TSS	Rectal Mucosa Donor 29	rectum
22	chr10:97849200-97850200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr10:97849200-97850200	Active TSS	Breast Myoepithelial Primary Cells	Breast
24	chr10:97849200-97850200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr10:97849200-97850200	Active TSS	Primary T cells from cord blood	blood
26	chr10:97849200-97850200	Active TSS	Primary hematopoietic stem cells short term culture	blood
27	chr10:97849200-97850200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:97849200-97850200	Active TSS	Brain Angular Gyrus	brain
29	chr10:97849200-97850200	Active TSS	Brain Anterior Caudate	brain
30	chr10:97849200-97850200	Active TSS	Brain Cingulate Gyrus	brain
31	chr10:97849200-97850200	Active TSS	Brain Hippocampus Middle	brain
32	chr10:97849200-97850200	Active TSS	Brain Inferior Temporal Lobe	brain
33	chr10:97849200-97850200	Active TSS	Colonic Mucosa	Colon
34	chr10:97849200-97850200	Active TSS	Colon Smooth Muscle	Colon
35	chr10:97849200-97850200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
36	chr10:97849200-97850200	Active TSS	Fetal Intestine Small	intestine
37	chr10:97849200-97850200	Active TSS	Fetal Muscle Trunk	muscle
38	chr10:97849200-97850200	Active TSS	Fetal Muscle Leg	muscle
39	chr10:97849200-97850200	Active TSS	Fetal Thymus	thymus
40	chr10:97849200-97850200	Active TSS	Psoas Muscle	Psoas
41	chr10:97849200-97850200	Active TSS	Rectal Smooth Muscle	rectum
42	chr10:97849200-97850200	Active TSS	Right Atrium	heart
43	chr10:97849200-97850200	Active TSS	Skeletal Muscle Male	skeletal muscle
44	chr10:97849200-97850200	Active TSS	Stomach Mucosa	stomach
45	chr10:97849200-97850200	Active TSS	Thymus	Thymus
46	chr10:97849200-97850200	Active TSS	Hela-S3	cervix
47	chr10:97849200-97850200	Active TSS	NHDF-Ad	bronchial
48	chr10:97849200-97850200	Active TSS	Osteobl	bone
49	chr10:97849200-97850400	Active TSS	H9 Cell Line	embryonic stem cell
50	chr10:97849200-97850400	Active TSS	HUES48 Cell Line	embryonic stem cell

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