Variant report

Variant	rs1172942
Chromosome Location	chr10:97872644-97872645
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10748663	0.81[ASN][1000 genomes]
rs10748664	0.81[ASN][1000 genomes]
rs10786264	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs10786266	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10786270	0.85[AMR][1000 genomes]
rs10882726	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11188592	0.88[EUR][1000 genomes]
rs11188600	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11188654	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172944	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1172945	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1172949	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1172962	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12255700	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12261029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12261332	0.91[AFR][1000 genomes]
rs12263592	0.88[AFR][1000 genomes]
rs12413222	0.88[EUR][1000 genomes]
rs12414619	0.88[EUR][1000 genomes]
rs1336456	0.88[EUR][1000 genomes]
rs1902702	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1981151	0.88[EUR][1000 genomes]
rs2125061	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446024	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484914	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2484915	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762091	0.88[EUR][1000 genomes]
rs41291604	0.88[EUR][1000 genomes]
rs4918985	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7087644	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7087926	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97872200-97873200	Enhancers	K562	blood

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