Variant report

Variant	rs4918985
Chromosome Location	chr10:97830083-97830084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97829922..97834594-chr10:97848296..97851749,4	K562	blood:
2	chr10:97823122..97825847-chr10:97829664..97831429,2	K562	blood:
3	chr10:97829295..97831486-chr10:97834692..97836435,2	K562	blood:
4	chr10:97828374..97831110-chr10:97889111..97892127,3	K562	blood:
5	chr10:97829963..97833632-chr10:97888619..97891681,4	K562	blood:
6	chr10:97830030..97833459-chr10:97848165..97850862,3	MCF-7	breast:
7	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
8	chr10:97824847..97827306-chr10:97828973..97831414,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000266407	Chromatin interaction
ENSG00000177853	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11188577	0.80[AFR][1000 genomes]
rs11188592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188600	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188654	0.88[EUR][1000 genomes]
rs1172942	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1172944	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1172945	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1172949	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1172962	0.86[CEU][hapmap]
rs12255700	0.85[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs12261029	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12261332	0.91[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs12263592	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];0.83[MKK][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12266223	0.84[ASW][hapmap];0.82[MKK][hapmap]
rs12413222	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414619	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12770030	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1336456	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981151	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125061	1.00[CEU][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2446024	0.85[CEU][hapmap];0.86[TSI][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2484914	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2484915	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3762091	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41291599	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41291604	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45564037	0.87[EUR][1000 genomes]
rs7087644	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97804600-97831800	Weak transcription	Stomach Mucosa	stomach
2	chr10:97816400-97831400	Weak transcription	Right Atrium	heart
3	chr10:97818000-97834200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr10:97818000-97842400	Weak transcription	Fetal Heart	heart
5	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
6	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
7	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
8	chr10:97818200-97832800	Weak transcription	HMEC	breast
9	chr10:97818200-97833200	Weak transcription	NHEK	skin
10	chr10:97818200-97833800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
12	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
14	chr10:97819200-97839000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
15	chr10:97819400-97833400	Weak transcription	NHLF	lung
16	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr10:97819600-97832600	Weak transcription	NHDF-Ad	bronchial
18	chr10:97819600-97840600	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr10:97819600-97848000	Weak transcription	HepG2	liver
20	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
21	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
23	chr10:97819600-97849400	Weak transcription	Ovary	ovary
24	chr10:97819800-97834400	Weak transcription	Fetal Intestine Large	intestine
25	chr10:97819800-97841400	Weak transcription	Liver	Liver
26	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr10:97820200-97833400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr10:97820200-97833600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr10:97820400-97842000	Weak transcription	Primary B cells from cord blood	blood
32	chr10:97821000-97833200	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
34	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
35	chr10:97821200-97834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr10:97822000-97833000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr10:97822200-97830200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr10:97822400-97830400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr10:97822400-97830400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr10:97822400-97832000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr10:97822400-97832200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr10:97822400-97834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr10:97822400-97840200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr10:97822600-97831200	Weak transcription	Left Ventricle	heart
47	chr10:97822600-97832400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:97822600-97832800	Weak transcription	Thymus	Thymus
49	chr10:97822600-97833000	Weak transcription	HSMM	muscle
50	chr10:97822600-97833400	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links