Variant report

Variant	rs1172962
Chromosome Location	chr10:97884731-97884732
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:160)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:160 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GABPA	chr10:97884073-97884896	HL-60	blood:	n/a	n/a
2	TEAD4	chr10:97883867-97884876	HepG2	liver:	n/a	n/a
3	EP300	chr10:97884408-97884848	K562	blood:	n/a	n/a
4	CHD2	chr10:97884247-97884829	HepG2	liver:	n/a	n/a
5	ELF1	chr10:97884311-97884872	HepG2	liver:	n/a	n/a
6	POLR2A	chr10:97884124-97885165	NB4	blood:	n/a	n/a
7	POLR2A	chr10:97884146-97884731	HepG2	liver:	n/a	n/a
8	POLR2A	chr10:97884205-97884796	H1-hESC	embryonic stem cell:	n/a	n/a
9	CEBPB	chr10:97883895-97884811	IMR90	lung:	n/a	chr10:97884467-97884478
10	CEBPB	chr10:97884584-97884823	HepG2	liver:	n/a	n/a
11	NFIC	chr10:97884094-97884757	HepG2	liver:	n/a	n/a
12	POLR2A	chr10:97884273-97884788	K562	blood:	n/a	n/a
13	FOXP2	chr10:97884304-97884771	PFSK-1	brain:	n/a	n/a
14	MAZ	chr10:97884217-97884806	HepG2	liver:	n/a	n/a
15	BRCA1	chr10:97884092-97884795	Hela-S3	cervix:	n/a	n/a
16	MXI1	chr10:97884267-97884758	HepG2	liver:	n/a	n/a
17	YY1	chr10:97884200-97884782	HCT-116	colon:	n/a	n/a
18	MBD4	chr10:97884225-97884828	HepG2	liver:	n/a	n/a
19	CEBPB	chr10:97884222-97884855	HepG2	liver:	n/a	chr10:97884467-97884478
20	POLR2A	chr10:97884311-97884874	Hela-S3	cervix:	n/a	n/a
21	FOXA1	chr10:97884474-97885283	HepG2	liver:	n/a	n/a
22	EP300	chr10:97884213-97884830	HepG2	liver:	n/a	n/a
23	MYBL2	chr10:97884167-97884927	HepG2	liver:	n/a	n/a
24	IRF1	chr10:97884422-97885130	K562	blood:	n/a	chr10:97884867-97884881 chr10:97884869-97884880 chr10:97885065-97885079 chr10:97885067-97885081
25	EP300	chr10:97884028-97885313	K562	blood:	n/a	n/a
26	TAF1	chr10:97884210-97884744	H1-hESC	embryonic stem cell:	n/a	n/a
27	SMC3	chr10:97884162-97884828	Hela-S3	cervix:	n/a	n/a
28	STAT3	chr10:97884713-97884915	MCF10A-Er-Src	breast:	n/a	n/a
29	RCOR1	chr10:97884193-97884886	Hela-S3	cervix:	n/a	n/a
30	ELF1	chr10:97884265-97884831	K562	blood:	n/a	n/a
31	GATA3	chr10:97884345-97884786	T-47D	breast:	n/a	n/a
32	KAP1	chr10:97883964-97884815	HEK293	kidney:	n/a	n/a
33	ATF3	chr10:97884535-97884851	K562	blood:	n/a	n/a
34	CEBPB	chr10:97883848-97884853	A549	lung:	n/a	chr10:97884467-97884478
35	TBP	chr10:97884342-97884732	H1-hESC	embryonic stem cell:	n/a	n/a
36	CEBPB	chr10:97883894-97884911	K562	blood:	n/a	chr10:97884467-97884478
37	POLR2A	chr10:97884283-97884934	K562	blood:	n/a	n/a
38	POLR2A	chr10:97884296-97885215	MCF10A-Er-Src	breast:	n/a	n/a
39	SP1	chr10:97883843-97884967	HCT-116	colon:	n/a	n/a
40	TBL1XR1	chr10:97884069-97886025	K562	blood:	n/a	n/a
41	ARID3A	chr10:97884195-97885263	K562	blood:	n/a	n/a
42	CEBPB	chr10:97884227-97884837	A549	lung:	n/a	chr10:97884467-97884478
43	BCL3	chr10:97884135-97884804	A549	lung:	n/a	n/a
44	POLR2A	chr10:97884087-97884823	HepG2	liver:	n/a	n/a
45	CEBPB	chr10:97883854-97885207	K562	blood:	n/a	chr10:97884467-97884478
46	ZMIZ1	chr10:97884403-97885023	K562	blood:	n/a	n/a
47	MYC	chr10:97884517-97884930	MCF10A-Er-Src	breast:	n/a	n/a
48	JUND	chr10:97884078-97885236	K562	blood:	n/a	chr10:97885203-97885212
49	YY1	chr10:97884309-97884844	HepG2	liver:	n/a	n/a
50	POLR2A	chr10:97884318-97884767	U87	brain:	n/a	n/a

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97798897..97809644-chr10:97883865..97893202,24	K562	blood:
2	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:
3	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
4	chr10:97827771..97833919-chr10:97884626..97888548,7	K562	blood:
5	chr1:28574415..28575209-chr10:97884217..97884814,2	NB4	blood:
6	chr10:97804129..97806997-chr10:97883987..97886731,5	K562	blood:
7	chr10:97882793..97884794-chr17:59472049..59474329,2	MCF-7	breast:
8	chr10:97843811..97845627-chr10:97883061..97885874,2	K562	blood:
9	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
10	chr10:97801795..97805700-chr10:97884363..97887508,3	MCF-7	breast:

No data

Variant related genes	Relation type
ZNF518A	TF binding region
ENSG00000267280	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10748663	0.81[ASN][1000 genomes]
rs10748664	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10786264	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10786266	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10786270	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10882726	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.99[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188592	0.87[CEU][hapmap]
rs11188600	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188654	0.82[ASN][1000 genomes]
rs1172942	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1172944	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1172945	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1172949	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12255700	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12414619	0.87[CEU][hapmap]
rs1902702	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2125061	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2446024	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2484914	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2484915	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2861304	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4918985	0.86[CEU][hapmap]
rs7087644	0.87[CEU][hapmap]
rs7087926	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97883800-97884800	Enhancers	HUVEC	blood vessel
2	chr10:97884000-97884800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:97884000-97884800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr10:97884000-97884800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr10:97884000-97884800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
6	chr10:97884000-97884800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
7	chr10:97884000-97884800	Flanking Active TSS	Dnd41	blood
8	chr10:97884000-97884800	Flanking Active TSS	Hela-S3	cervix
9	chr10:97884000-97885000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:97884000-97885000	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr10:97884000-97885000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:97884000-97885200	Flanking Active TSS	A549	lung
13	chr10:97884200-97884800	Flanking Active TSS	H1 Cell Line	embryonic stem cell
14	chr10:97884200-97884800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr10:97884200-97884800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
16	chr10:97884200-97884800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:97884200-97884800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr10:97884200-97884800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr10:97884200-97884800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr10:97884200-97884800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
21	chr10:97884200-97884800	Active TSS	Duodenum Mucosa	Duodenum
22	chr10:97884200-97884800	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr10:97884200-97884800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
24	chr10:97884200-97884800	Bivalent/Poised TSS	Fetal Stomach	stomach
25	chr10:97884200-97884800	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
26	chr10:97884200-97884800	Flanking Active TSS	HMEC	breast
27	chr10:97884200-97884800	Active TSS	HSMM	muscle
28	chr10:97884200-97884800	Flanking Active TSS	NHEK	skin
29	chr10:97884200-97885000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr10:97884200-97885000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr10:97884200-97885000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr10:97884200-97885000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
33	chr10:97884400-97884800	Flanking Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr10:97884400-97884800	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:97884400-97884800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr10:97884400-97884800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:97884400-97884800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:97884400-97884800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:97884400-97884800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:97884400-97884800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr10:97884400-97884800	Bivalent/Poised TSS	Primary B cells from cord blood	blood
42	chr10:97884400-97884800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
43	chr10:97884400-97884800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:97884400-97884800	Bivalent/Poised TSS	Colonic Mucosa	Colon
45	chr10:97884400-97884800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
46	chr10:97884400-97884800	Active TSS	Fetal Intestine Large	intestine
47	chr10:97884400-97884800	Flanking Active TSS	Placenta	Placenta
48	chr10:97884400-97884800	Flanking Active TSS	Fetal Thymus	thymus
49	chr10:97884400-97884800	Active TSS	Pancreas	Pancrea
50	chr10:97884400-97884800	Active TSS	Placenta Amnion	Placenta Amnion

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