Variant report

Variant	rs11188654
Chromosome Location	chr10:97946542-97946543
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10748663	0.98[ASN][1000 genomes]
rs10748664	1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10786264	0.86[ASN][1000 genomes]
rs10786266	0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10786270	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10882726	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[ASN][1000 genomes]
rs11188592	0.85[CEU][hapmap];1.00[YRI][hapmap];0.88[EUR][1000 genomes]
rs11188600	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1172942	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172944	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172945	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172949	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1172962	1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.82[ASN][1000 genomes]
rs12255700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12261029	0.88[EUR][1000 genomes]
rs12413222	0.88[EUR][1000 genomes]
rs12414619	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs1336456	0.88[EUR][1000 genomes]
rs1902702	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1981151	0.88[EUR][1000 genomes]
rs2125061	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2446024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484914	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2484915	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3762091	1.00[CEU][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs41291604	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4918985	0.85[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7075831	0.81[ASN][1000 genomes]
rs7087644	0.85[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7087926	0.86[ASN][1000 genomes]
rs7099132	0.81[ASN][1000 genomes]
rs74151285	0.81[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain

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