Variant report

Variant	rs11188600
Chromosome Location	chr10:97856158-97856159
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97856059..97858153-chr10:97870361..97872310,2	K562	blood:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr10:97848249..97852807-chr10:97853294..97857054,6	MCF-7	breast:
4	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10748664	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs10786264	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10786266	0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10786270	0.85[AMR][1000 genomes]
rs10882726	1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11188592	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs11188654	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1172942	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172944	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172945	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1172962	0.87[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12255700	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12261029	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12261332	0.93[AFR][1000 genomes]
rs12263592	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs12413222	0.88[EUR][1000 genomes]
rs12414619	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs1336456	0.88[EUR][1000 genomes]
rs1902702	1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1981151	0.88[EUR][1000 genomes]
rs2125061	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2446024	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2484915	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3762091	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs41291604	0.88[EUR][1000 genomes]
rs4918985	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7087644	1.00[CEU][hapmap];0.95[YRI][hapmap];0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7087926	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97854600-97859800	Weak transcription	K562	blood

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