Variant report

Variant	rs12255700
Chromosome Location	chr10:97900024-97900025
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:97802208..97804173-chr10:97900018..97901793,2	MCF-7	breast:
2	chr10:97887805..97893654-chr10:97893672..97904604,20	MCF-7	breast:
3	chr10:97814888..97816986-chr10:97899408..97902001,2	K562	blood:
4	chr10:97899843..97903652-chr10:97906126..97909504,4	K562	blood:

Variant related genes	Relation type
ENSG00000226688	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10748663	0.83[ASN][1000 genomes]
rs10748664	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10786264	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs10786266	0.97[ASN][1000 genomes]
rs10882726	0.85[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs11188592	0.85[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11188600	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11188654	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1172942	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172944	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172945	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172949	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1172962	1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12261029	0.88[EUR][1000 genomes]
rs12413222	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12414619	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1336456	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1902702	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.97[ASN][1000 genomes]
rs1981151	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2125061	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2446024	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484914	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2484915	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3762091	1.00[CEU][hapmap];1.00[LWK][hapmap];0.86[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs41291599	0.83[AMR][1000 genomes]
rs41291604	0.88[EUR][1000 genomes]
rs4918985	0.85[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7087644	0.85[CEU][hapmap];0.86[TSI][hapmap];0.88[EUR][1000 genomes]
rs7087926	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97890600-97911200	Weak transcription	Gastric	stomach
2	chr10:97890600-97911200	Weak transcription	Spleen	Spleen
3	chr10:97890600-97912800	Weak transcription	Esophagus	oesophagus
4	chr10:97890800-97912800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr10:97890800-97917200	Weak transcription	Small Intestine	intestine
6	chr10:97890800-97922400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:97891000-97906400	Weak transcription	Right Ventricle	heart
8	chr10:97891000-97906600	Weak transcription	Psoas Muscle	Psoas
9	chr10:97891000-97913400	Weak transcription	Brain Germinal Matrix	brain
10	chr10:97891000-97914000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:97891000-97927000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr10:97891200-97911000	Weak transcription	HSMMtube	muscle
13	chr10:97891200-97911400	Weak transcription	Fetal Brain Male	brain
14	chr10:97891400-97911000	Weak transcription	Brain Anterior Caudate	brain
15	chr10:97891400-97916400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr10:97891400-97918200	Weak transcription	NHLF	lung
17	chr10:97891600-97911200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:97891600-97913400	Weak transcription	Fetal Heart	heart
19	chr10:97891800-97921400	Weak transcription	Stomach Mucosa	stomach
20	chr10:97892000-97912200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr10:97892400-97901400	Strong transcription	Primary monocytes fromperipheralblood	blood
22	chr10:97892400-97909600	Strong transcription	Primary B cells from peripheral blood	blood
23	chr10:97892400-97924800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:97892600-97907800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr10:97892600-97909800	Strong transcription	Liver	Liver
26	chr10:97892800-97907800	Strong transcription	Duodenum Mucosa	Duodenum
27	chr10:97892800-97909400	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr10:97892800-97924200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr10:97893000-97902000	Strong transcription	Monocytes-CD14+_RO01746	blood
30	chr10:97893000-97903600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr10:97893000-97904000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr10:97893000-97904000	Strong transcription	Fetal Muscle Leg	muscle
33	chr10:97893000-97907200	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr10:97893000-97907400	Strong transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:97893000-97907600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr10:97893000-97907600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:97893000-97907800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:97893000-97907800	Strong transcription	Primary B cells from cord blood	blood
39	chr10:97893000-97908400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr10:97893000-97909400	Strong transcription	Fetal Intestine Large	intestine
41	chr10:97893000-97909800	Strong transcription	Primary T cells fromperipheralblood	blood
42	chr10:97893200-97903800	Strong transcription	Primary T cells from cord blood	blood
43	chr10:97893200-97904200	Strong transcription	Adipose Nuclei	Adipose
44	chr10:97893200-97904600	Strong transcription	Placenta	Placenta
45	chr10:97893200-97907600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr10:97893200-97907800	Strong transcription	Fetal Thymus	thymus
47	chr10:97893400-97900200	Strong transcription	Fetal Muscle Trunk	muscle
48	chr10:97893400-97900600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr10:97893400-97904000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr10:97893400-97907800	Strong transcription	Dnd41	blood

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