Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:97888142..97890161-chr10:97948497..97950292,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177853	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10748663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10786264	0.85[ASN][1000 genomes]
rs10786266	0.86[ASN][1000 genomes]
rs10786270	0.92[ASN][1000 genomes]
rs10882726	1.00[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11188600	1.00[CHB][hapmap];0.92[JPT][hapmap]
rs11188654	0.98[ASN][1000 genomes]
rs1172942	0.81[ASN][1000 genomes]
rs1172944	0.81[ASN][1000 genomes]
rs1172945	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1172949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1172962	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12255700	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12770030	0.85[CEU][hapmap]
rs1902702	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2125061	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2446024	1.00[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2484914	0.81[ASN][1000 genomes]
rs2484915	0.81[ASN][1000 genomes]
rs7087926	0.85[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10748664	ZNF518A	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97945600-97956200	Weak transcription	Brain Substantia Nigra	brain
2	chr10:97947000-97950000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:97947400-97949600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr10:97947400-97961800	Weak transcription	Pancreas	Pancrea
5	chr10:97947800-97949600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:97947800-97949800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:97948000-97948800	Enhancers	HSMMtube	muscle
8	chr10:97948000-97949000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:97948000-97949200	Enhancers	Osteobl	bone
10	chr10:97948000-97963800	Weak transcription	Placenta	Placenta
11	chr10:97948200-97948800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:97948200-97949400	Enhancers	Muscle Satellite Cultured Cells	--
13	chr10:97948200-97963600	Weak transcription	Gastric	stomach
14	chr10:97948200-97979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr10:97948400-97957000	Weak transcription	Fetal Intestine Small	intestine
16	chr10:97948400-97974200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr10:97948600-97949400	Weak transcription	Primary B cells from cord blood	blood
18	chr10:97948600-97962800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr10:97948600-97969400	Weak transcription	Fetal Stomach	stomach

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