Variant report

Variant	rs1336456
Chromosome Location	chr10:97848624-97848625
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:97845947..97847739-chr10:97848034..97849762,3	K562	blood:
2	chr10:97845791..97859010-chr10:97880529..97895862,76	K562	blood:
3	chr10:97848038..97851071-chr10:97871743..97873669,3	MCF-7	breast:
4	chr10:97840461..97842109-chr10:97846882..97849195,2	MCF-7	breast:
5	chr10:97847100..97852766-chr10:97886402..97893071,22	MCF-7	breast:
6	chr10:97800624..97806520-chr10:97847575..97852414,10	K562	blood:
7	chr10:97823320..97825037-chr10:97846157..97848908,2	K562	blood:
8	chr10:97802232..97804620-chr10:97847329..97851017,4	K562	blood:
9	chr10:97847401..97854280-chr10:97883753..97891876,34	MCF-7	breast:
10	chr10:97838555..97859010-chr10:97880529..97894933,78	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCNJ-4	chr10:97846433-97849195	NONHSAT015791

No data

Variant related genes	Relation type
ENSG00000200728	Chromatin interaction
ENSG00000177853	Chromatin interaction
ENSG00000107443	Chromatin interaction
ENSG00000266407	Chromatin interaction
ENSG00000226688	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11188592	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11188600	0.88[EUR][1000 genomes]
rs11188654	0.88[EUR][1000 genomes]
rs1172942	0.88[EUR][1000 genomes]
rs1172944	0.86[EUR][1000 genomes]
rs1172945	0.88[EUR][1000 genomes]
rs1172949	0.84[EUR][1000 genomes]
rs12255700	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12261029	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12261332	0.82[ASN][1000 genomes]
rs12263592	0.88[ASN][1000 genomes]
rs12413222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12414619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1981151	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2125061	0.88[EUR][1000 genomes]
rs2446024	0.84[EUR][1000 genomes]
rs2484914	0.88[EUR][1000 genomes]
rs2484915	0.88[EUR][1000 genomes]
rs3762091	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs41291599	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41291604	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45564037	0.87[EUR][1000 genomes]
rs4918985	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7087644	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:97818000-97849200	Weak transcription	Psoas Muscle	Psoas
2	chr10:97818000-97849400	Weak transcription	Pancreas	Pancrea
3	chr10:97818000-97849400	Weak transcription	Spleen	Spleen
4	chr10:97818200-97849000	Weak transcription	Brain Substantia Nigra	brain
5	chr10:97818400-97849200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:97818400-97849400	Weak transcription	Right Ventricle	heart
7	chr10:97819400-97849200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr10:97819600-97849000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:97819600-97849200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr10:97819600-97849200	Weak transcription	Brain Hippocampus Middle	brain
11	chr10:97819600-97849400	Weak transcription	Ovary	ovary
12	chr10:97819800-97849200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr10:97819800-97849200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr10:97820200-97849000	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:97821000-97849000	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr10:97821000-97849200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr10:97821600-97849000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr10:97822400-97848800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr10:97822600-97849200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr10:97822600-97849200	Weak transcription	Aorta	Aorta
21	chr10:97822600-97849200	Weak transcription	Fetal Muscle Leg	muscle
22	chr10:97822800-97849200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr10:97822800-97849200	Weak transcription	Fetal Stomach	stomach
24	chr10:97823000-97849200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr10:97823200-97849000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr10:97823200-97849200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr10:97823800-97849000	Weak transcription	Fetal Brain Female	brain
28	chr10:97833800-97849000	Weak transcription	Primary hematopoietic stem cells	blood
29	chr10:97834000-97849000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:97834000-97849200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:97834600-97849000	Weak transcription	HSMMtube	muscle
32	chr10:97835000-97849000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr10:97836400-97849200	Weak transcription	Thymus	Thymus
34	chr10:97838000-97849000	Weak transcription	Brain Germinal Matrix	brain
35	chr10:97838000-97849200	Weak transcription	Fetal Brain Male	brain
36	chr10:97838400-97849000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr10:97839800-97849200	Weak transcription	Fetal Lung	lung
38	chr10:97840600-97849200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr10:97841800-97849200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:97842200-97849200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr10:97842400-97848800	Weak transcription	Primary T cells from cord blood	blood
42	chr10:97842400-97849400	Weak transcription	Left Ventricle	heart
43	chr10:97842600-97849000	Weak transcription	Adipose Nuclei	Adipose
44	chr10:97843000-97849400	Weak transcription	Fetal Heart	heart
45	chr10:97843800-97849400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr10:97844000-97849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:97844200-97849200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr10:97845200-97849200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr10:97847800-97848800	Enhancers	Fetal Kidney	kidney
50	chr10:97848000-97849000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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