Variant report

Variant	rs12261630
Chromosome Location	chr10:22936353-22936354
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22935997..22937858-chr10:22985488..22987779,2	K562	blood:
2	chr10:22935992..22938184-chr10:22964745..22966524,2	MCF-7	breast:
3	chr10:22928174..22930597-chr10:22933685..22936850,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11814650	1.00[EUR][1000 genomes]
rs12253402	1.00[AFR][1000 genomes]
rs1359639	1.00[EUR][1000 genomes]
rs16922558	1.00[EUR][1000 genomes]
rs16922642	1.00[EUR][1000 genomes]
rs56229946	1.00[EUR][1000 genomes]
rs6482230	1.00[EUR][1000 genomes]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs7091618	1.00[EUR][1000 genomes]
rs7092039	1.00[EUR][1000 genomes]
rs72816866	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7919135	1.00[EUR][1000 genomes]
rs7922160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22915000-22951800	Weak transcription	Fetal Intestine Small	intestine
2	chr10:22920000-22936400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:22921000-22940400	Weak transcription	Ovary	ovary
4	chr10:22923000-22937600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:22926000-22938600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr10:22927800-22942800	Enhancers	Brain Anterior Caudate	brain
7	chr10:22929200-22938600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr10:22929600-22948400	Enhancers	Brain Cingulate Gyrus	brain
9	chr10:22929800-22939800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:22930400-22938600	Enhancers	Brain Hippocampus Middle	brain
11	chr10:22931200-22938400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr10:22931200-22938400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr10:22931600-22941000	Enhancers	Brain Angular Gyrus	brain
14	chr10:22931800-22937000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr10:22932200-22936400	Weak transcription	NHLF	lung
16	chr10:22932400-22940400	Enhancers	Fetal Thymus	thymus
17	chr10:22932400-22944200	Weak transcription	Brain Germinal Matrix	brain
18	chr10:22933200-22936600	Weak transcription	Aorta	Aorta
19	chr10:22933200-22936800	Weak transcription	Stomach Mucosa	stomach
20	chr10:22933400-22936600	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr10:22933400-22937400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr10:22933600-22936400	Enhancers	K562	blood
23	chr10:22933600-22938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:22933600-22944200	Weak transcription	Fetal Stomach	stomach
25	chr10:22934000-22936400	Weak transcription	Small Intestine	intestine
26	chr10:22934600-22936800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:22934800-22936400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
28	chr10:22934800-22937800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:22934800-22939400	Enhancers	Dnd41	blood
30	chr10:22934800-22942400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
31	chr10:22935000-22936400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:22935000-22936400	Flanking Active TSS	GM12878-XiMat	blood
33	chr10:22935000-22936800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:22935000-22937000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
35	chr10:22935000-22937000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
36	chr10:22935000-22937200	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr10:22935000-22938200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:22935000-22938600	Enhancers	Primary hematopoietic stem cells short term culture	blood
39	chr10:22935000-22939000	Enhancers	Thymus	Thymus
40	chr10:22935000-22945400	Enhancers	Primary B cells from peripheral blood	blood
41	chr10:22935200-22936600	Enhancers	HUVEC	blood vessel
42	chr10:22935200-22938400	Enhancers	Primary T cells fromperipheralblood	blood
43	chr10:22935200-22938600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr10:22935200-22938600	Enhancers	iPS-20b Cell Line	embryonic stem cell
45	chr10:22935200-22938800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr10:22935200-22939200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr10:22935200-22953000	Enhancers	Brain Substantia Nigra	brain
48	chr10:22935400-22937400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr10:22935400-22937800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr10:22935400-22938000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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