Variant report
| Variant | rs7072301 |
|---|---|
| Chromosome Location | chr10:23033291-23033292 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr10:22944721..22947461-chr10:23031170..23034103,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs12259759 | 1.00[EUR][1000 genomes] |
| rs12261630 | 1.00[EUR][1000 genomes] |
| rs16916143 | 1.00[EUR][1000 genomes] |
| rs16922558 | 1.00[EUR][1000 genomes] |
| rs16922642 | 1.00[EUR][1000 genomes] |
| rs16922745 | 1.00[EUR][1000 genomes] |
| rs16922788 | 1.00[EUR][1000 genomes] |
| rs16922800 | 1.00[EUR][1000 genomes] |
| rs2364867 | 1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs6482230 | 1.00[EUR][1000 genomes] |
| rs6482238 | 0.90[AMR][1000 genomes] |
| rs6482243 | 1.00[EUR][1000 genomes] |
| rs7071781 | 1.00[MEX][hapmap] |
| rs7081969 | 1.00[EUR][1000 genomes] |
| rs7092039 | 1.00[EUR][1000 genomes] |
| rs72816866 | 1.00[EUR][1000 genomes] |
| rs73600514 | 1.00[EUR][1000 genomes] |
| rs7895792 | 1.00[EUR][1000 genomes] |
| rs7899359 | 1.00[EUR][1000 genomes] |
| rs7911363 | 1.00[EUR][1000 genomes] |
| rs7918553 | 1.00[MEX][hapmap];1.00[EUR][1000 genomes] |
| rs7919135 | 1.00[EUR][1000 genomes] |
| rs7922160 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831809 | chr10:22918101-23069676 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv550210 | chr10:23012096-23064702 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv550211 | chr10:23020350-23079385 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv550212 | chr10:23030282-23086690 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:23031000-23033400 | Enhancers | Primary monocytes fromperipheralblood | blood |
| 2 | chr10:23033200-23033400 | Enhancers | Monocytes-CD14+_RO01746 | blood |
