Variant report

Variant	rs6482243
Chromosome Location	chr10:23200494-23200495
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10508655	0.90[AMR][1000 genomes]
rs12259759	1.00[EUR][1000 genomes]
rs16916143	1.00[EUR][1000 genomes]
rs16922642	1.00[EUR][1000 genomes]
rs16922745	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16922788	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922800	1.00[EUR][1000 genomes]
rs2364867	1.00[EUR][1000 genomes]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7911363	1.00[EUR][1000 genomes]
rs7918553	0.82[MKK][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23200000-23200600	Enhancers	Small Intestine	intestine
2	chr10:23200200-23202000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr10:23200400-23200600	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr10:23200400-23202200	Enhancers	Fetal Kidney	kidney
5	chr10:23200400-23202800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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