Variant report

Variant	rs7918553
Chromosome Location	chr10:23220902-23220903
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:23220895-23221311	U87	brain:	n/a	n/a
2	E2F4	chr10:23220858-23221257	MCF10A-Er-Src	breast:	n/a	chr10:23220983-23220992
3	FOS	chr10:23220902-23221263	MCF10A-Er-Src	breast:	n/a	n/a
4	POLR2A	chr10:23220895-23221339	U87	brain:	n/a	n/a
5	FOS	chr10:23220875-23221373	HUVEC	blood vessel:	n/a	n/a
6	FOS	chr10:23220845-23221366	MCF10A-Er-Src	breast:	n/a	n/a
7	STAT3	chr10:23220816-23221300	MCF10A-Er-Src	breast:	n/a	n/a
8	FOSL1	chr10:23220863-23221288	HCT-116	colon:	n/a	n/a
9	RCOR1	chr10:23220870-23221169	GM12878	blood:	n/a	n/a
10	FOS	chr10:23220866-23221375	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:23216878..23218671-chr10:23220223..23223029,3	K562	blood:
2	chr10:23216878..23219507-chr10:23220223..23223862,3	K562	blood:

Variant related genes	Relation type
ARMC3	TF binding region
ENSG00000165309	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508655	0.81[AMR][1000 genomes]
rs12259759	1.00[EUR][1000 genomes]
rs16916143	1.00[EUR][1000 genomes]
rs16922745	1.00[EUR][1000 genomes]
rs16922788	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922800	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2364867	1.00[MEX][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482243	1.00[EUR][1000 genomes]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7911363	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23217200-23221000	Weak transcription	HSMM	muscle
2	chr10:23217400-23221000	Weak transcription	Brain Substantia Nigra	brain
3	chr10:23218800-23221200	Weak transcription	Brain Anterior Caudate	brain
4	chr10:23219800-23221200	Weak transcription	Adipose Nuclei	Adipose
5	chr10:23220400-23221400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:23220400-23221400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:23220400-23221400	Enhancers	Duodenum Mucosa	Duodenum
8	chr10:23220400-23221800	Enhancers	Brain Angular Gyrus	brain
9	chr10:23220400-23222000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr10:23220400-23222000	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:23220400-23222200	Enhancers	Primary B cells from peripheral blood	blood
12	chr10:23220600-23221000	Enhancers	Fetal Heart	heart
13	chr10:23220600-23221000	Enhancers	Fetal Intestine Large	intestine
14	chr10:23220600-23221000	Enhancers	NH-A	brain
15	chr10:23220600-23221000	Enhancers	NHEK	skin
16	chr10:23220600-23221200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr10:23220600-23221200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr10:23220600-23221200	Enhancers	Stomach Mucosa	stomach
19	chr10:23220600-23221400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr10:23220600-23222000	Enhancers	Brain Hippocampus Middle	brain
21	chr10:23220800-23221000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:23220800-23221400	Bivalent Enhancer	HUVEC	blood vessel
23	chr10:23220800-23221600	Enhancers	Osteobl	bone
24	chr10:23220800-23221800	Enhancers	Primary B cells from cord blood	blood
25	chr10:23220800-23221800	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr10:23220800-23221800	Enhancers	GM12878-XiMat	blood
27	chr10:23220800-23222000	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links