Variant report

Variant	rs7911363
Chromosome Location	chr10:23222119-23222120
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508655	0.81[AMR][1000 genomes]
rs12259759	1.00[EUR][1000 genomes]
rs16916143	1.00[EUR][1000 genomes]
rs16922745	1.00[EUR][1000 genomes]
rs16922788	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16922800	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2364867	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6482243	1.00[EUR][1000 genomes]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7918553	0.85[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23220400-23222200	Enhancers	Primary B cells from peripheral blood	blood
2	chr10:23221200-23222200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:23221200-23222600	Enhancers	Adipose Nuclei	Adipose
4	chr10:23221400-23222200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr10:23221400-23222200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr10:23222000-23222200	Active TSS	Osteobl	bone
7	chr10:23222000-23222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr10:23222000-23223400	Weak transcription	Brain Anterior Caudate	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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