Variant report

Variant	rs16922788
Chromosome Location	chr10:23202522-23202523
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10508655	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12259759	1.00[EUR][1000 genomes]
rs16916143	1.00[EUR][1000 genomes]
rs16922642	1.00[EUR][1000 genomes]
rs16922745	1.00[EUR][1000 genomes]
rs16922800	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2364867	1.00[MEX][hapmap];1.00[EUR][1000 genomes]
rs6482243	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7071781	1.00[MEX][hapmap]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7911363	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7918553	1.00[MEX][hapmap];0.84[MKK][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2764013	chr10:23087298-23239345	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv894966	chr10:23090535-23202522	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:23200400-23202800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr10:23200800-23202800	Enhancers	Fetal Heart	heart
3	chr10:23201000-23204000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr10:23201600-23203000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:23201600-23203400	Weak transcription	Ovary	ovary
6	chr10:23202200-23204000	Weak transcription	Fetal Kidney	kidney

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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