Variant report

Variant	rs7919135
Chromosome Location	chr10:22998542-22998543
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:22997562..22999322-chr10:23342370..23344992,2	K562	blood:
2	chr10:22969827..22972889-chr10:22996962..23000466,4	K562	blood:
3	chr10:22997084..22999749-chr10:23005205..23007766,2	K562	blood:
4	chr10:22995966..22998873-chr10:23000666..23004959,7	MCF-7	breast:
5	chr10:22998249..23002075-chr10:23006218..23008231,3	K562	blood:

Variant related genes	Relation type
ENSG00000150867	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12261630	1.00[EUR][1000 genomes]
rs16922558	1.00[EUR][1000 genomes]
rs16922642	1.00[EUR][1000 genomes]
rs16922745	1.00[EUR][1000 genomes]
rs56229946	1.00[EUR][1000 genomes]
rs6482230	1.00[EUR][1000 genomes]
rs7072301	1.00[EUR][1000 genomes]
rs7081969	1.00[EUR][1000 genomes]
rs7091618	1.00[EUR][1000 genomes]
rs7092039	1.00[EUR][1000 genomes]
rs72816866	1.00[EUR][1000 genomes]
rs73600514	1.00[EUR][1000 genomes]
rs7895792	1.00[EUR][1000 genomes]
rs7899359	1.00[EUR][1000 genomes]
rs7922160	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1830947	chr10:22881196-23004381	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv831809	chr10:22918101-23069676	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:93 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22972600-23000200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr10:22972800-22999400	Enhancers	Primary T helper cells fromperipheralblood	blood
3	chr10:22973000-22999200	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr10:22975600-23001200	Weak transcription	Colonic Mucosa	Colon
5	chr10:22977600-22999200	Weak transcription	Dnd41	blood
6	chr10:22980400-22999000	Weak transcription	Lung	lung
7	chr10:22980400-23000800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:22983000-22999000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr10:22983000-22999200	Weak transcription	HSMM	muscle
10	chr10:22983200-22999200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr10:22983200-23000400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr10:22983200-23001200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr10:22983200-23001400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr10:22983400-23000000	Weak transcription	NHLF	lung
15	chr10:22987200-22999200	Weak transcription	Psoas Muscle	Psoas
16	chr10:22987200-23001600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr10:22987200-23001600	Weak transcription	Ovary	ovary
18	chr10:22987800-23000400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr10:22988600-23001600	Weak transcription	Fetal Intestine Small	intestine
20	chr10:22989200-22999000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:22989200-23000000	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:22989600-22999200	Weak transcription	Esophagus	oesophagus
23	chr10:22989600-23001800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr10:22989600-23001800	Weak transcription	Pancreas	Pancrea
25	chr10:22990600-22999200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:22990600-22999400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr10:22990600-23000400	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr10:22990600-23001800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr10:22990800-22999000	Weak transcription	Thymus	Thymus
30	chr10:22990800-22999200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr10:22990800-22999200	Weak transcription	Primary neutrophils fromperipheralblood	blood
32	chr10:22990800-23000000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr10:22990800-23001000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:22990800-23001000	Weak transcription	HUVEC	blood vessel
35	chr10:22990800-23001400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr10:22990800-23001600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr10:22990800-23001600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr10:22991200-22999200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr10:22991200-22999400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr10:22991200-23000000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr10:22991200-23001600	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr10:22991400-22999400	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:22991600-22999200	Weak transcription	Fetal Muscle Leg	muscle
44	chr10:22991800-22999000	Weak transcription	Small Intestine	intestine
45	chr10:22991800-23000000	Weak transcription	Duodenum Mucosa	Duodenum
46	chr10:22992000-22999000	Weak transcription	Colon Smooth Muscle	Colon
47	chr10:22992000-22999200	Weak transcription	Liver	Liver
48	chr10:22992000-22999400	Weak transcription	Fetal Lung	lung
49	chr10:22992000-23000400	Weak transcription	Fetal Stomach	stomach
50	chr10:22992200-23000200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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