Variant report
Variant | rs12273557 |
---|---|
Chromosome Location | chr3:150552752-150552753 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10219211 | 0.94[ASN][1000 genomes] |
rs10502256 | 0.94[ASN][1000 genomes] |
rs11218409 | 0.89[ASN][1000 genomes] |
rs11218414 | 1.00[ASN][1000 genomes] |
rs11218415 | 1.00[ASN][1000 genomes] |
rs11218416 | 1.00[ASN][1000 genomes] |
rs11218431 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs11218435 | 1.00[ASN][1000 genomes] |
rs11218439 | 1.00[ASN][1000 genomes] |
rs12276466 | 0.89[ASN][1000 genomes] |
rs12277681 | 0.94[ASN][1000 genomes] |
rs12277948 | 0.94[ASN][1000 genomes] |
rs12282527 | 0.94[ASN][1000 genomes] |
rs12287945 | 1.00[ASN][1000 genomes] |
rs12290988 | 0.94[ASN][1000 genomes] |
rs1789763 | 0.94[ASN][1000 genomes] |
rs28378150 | 1.00[ASN][1000 genomes] |
rs543959 | 0.94[ASN][1000 genomes] |
rs61903403 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7935547 | 0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7938656 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs7940956 | 0.94[ASN][1000 genomes] |
rs7941972 | 1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv532662 | chr3:150180747-150633414 | Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 101 gene(s) | inside rSNPs | diseases |
2 | nsv818177 | chr3:150541363-150566422 | Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive region | 5 gene(s) | inside rSNPs | diseases |
3 | esv3375378 | chr3:150552662-150556960 | ZNF genes & repeats Bivalent Enhancer Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:150550600-150556200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |