Variant report
| Variant | rs12292475 |
|---|---|
| Chromosome Location | chr11:100895010-100895011 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:100893027..100895241-chr15:65587831..65589775,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000199568 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11224544 | 1.00[EUR][1000 genomes] |
| rs11224551 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11224553 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11224555 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11571228 | 0.83[EUR][1000 genomes] |
| rs11571240 | 0.83[EUR][1000 genomes] |
| rs11571242 | 0.83[EUR][1000 genomes] |
| rs11571262 | 0.83[EUR][1000 genomes] |
| rs11571277 | 0.83[EUR][1000 genomes] |
| rs13377359 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17096184 | 0.83[EUR][1000 genomes] |
| rs2020879 | 0.83[EUR][1000 genomes] |
| rs2124761 | 0.83[EUR][1000 genomes] |
| rs4363557 | 0.83[EUR][1000 genomes] |
| rs56935038 | 0.83[EUR][1000 genomes] |
| rs57770872 | 0.83[EUR][1000 genomes] |
| rs6590836 | 1.00[EUR][1000 genomes] |
| rs6590837 | 0.83[EUR][1000 genomes] |
| rs6590838 | 0.83[EUR][1000 genomes] |
| rs7943356 | 1.00[EUR][1000 genomes] |
| rs7944104 | 1.00[EUR][1000 genomes] |
| rs7944354 | 1.00[EUR][1000 genomes] |
| rs9804456 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9804484 | 0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048356 | chr11:100713096-101058995 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv541154 | chr11:100713096-101058995 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv976473 | chr11:100889614-100895412 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:100893800-100903200 | Weak transcription | Aorta | Aorta |
