Variant report

Variant	rs56935038
Chromosome Location	chr11:100914195-100914196
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11224544	0.83[EUR][1000 genomes]
rs11224551	0.83[EUR][1000 genomes]
rs11224553	0.83[EUR][1000 genomes]
rs11224555	0.83[EUR][1000 genomes]
rs11571138	1.00[AMR][1000 genomes]
rs11571228	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571240	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571242	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292475	0.83[EUR][1000 genomes]
rs13377359	0.83[EUR][1000 genomes]
rs17096184	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2020879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2124761	1.00[EUR][1000 genomes]
rs4363557	1.00[EUR][1000 genomes]
rs57770872	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58018759	1.00[AMR][1000 genomes]
rs59891301	1.00[AMR][1000 genomes]
rs59965911	0.83[EUR][1000 genomes]
rs61493400	1.00[AMR][1000 genomes]
rs6590836	0.83[EUR][1000 genomes]
rs6590837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590838	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112977	1.00[AMR][1000 genomes]
rs7113269	1.00[AMR][1000 genomes]
rs7128626	1.00[AMR][1000 genomes]
rs73573637	1.00[AMR][1000 genomes]
rs7928290	1.00[AMR][1000 genomes]
rs7943356	0.83[EUR][1000 genomes]
rs7943946	1.00[AMR][1000 genomes]
rs7944104	0.83[EUR][1000 genomes]
rs7944354	0.83[EUR][1000 genomes]
rs9804456	0.83[EUR][1000 genomes]
rs9804484	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100920000	Weak transcription	Fetal Lung	lung
3	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
4	chr11:100913200-100919000	Weak transcription	Ovary	ovary
5	chr11:100913400-100914200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links