Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11571138	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571228	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571262	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17096184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2020879	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56935038	1.00[AMR][1000 genomes]
rs57770872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59891301	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965911	0.97[AFR][1000 genomes]
rs61493400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590838	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112977	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128626	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928290	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100972400-100990600	Weak transcription	Rectal Smooth Muscle	rectum
3	chr11:100975800-100996800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:100978000-100996400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100980200-100986800	Weak transcription	Ovary	ovary
6	chr11:100980800-100983000	Weak transcription	Aorta	Aorta
7	chr11:100981000-100981600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr11:100981200-100985400	Weak transcription	Fetal Lung	lung

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