Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:101001029-101001213	MCF10A-Er-Src	breast:	n/a	n/a

Variant related genes	Relation type
PGR	TF binding region

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11571228	0.89[ASW][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571240	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571242	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571262	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571277	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17096184	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2020879	1.00[ASW][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124761	1.00[TSI][hapmap]
rs56935038	1.00[AMR][1000 genomes]
rs57770872	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59891301	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965911	0.97[AFR][1000 genomes]
rs61493400	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590837	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590838	1.00[ASW][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112977	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113269	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7128626	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73573637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928290	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7943946	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv556131	chr11:100985777-101480017	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	7 gene(s)	inside rSNPs	diseases
4	nsv898328	chr11:100993846-101009933	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100996600-101001200	Active TSS	Pancreatic Islets	Pancreatic Islet
2	chr11:101000600-101001600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr11:101000600-101011000	Weak transcription	Aorta	Aorta
4	chr11:101000800-101001600	Enhancers	K562	blood
5	chr11:101000800-101002400	Weak transcription	Right Ventricle	heart
6	chr11:101000800-101023000	Weak transcription	Ovary	ovary

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