Variant report

Variant	rs7928290
Chromosome Location	chr11:100964590-100964591
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100964171..100966264-chr11:100996751..100998539,2	K562	blood:
2	chr11:100963763..100967050-chr11:100968885..100972063,4	MCF-7	breast:
3	chr11:100963209..100965255-chr11:100965604..100968767,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11571138	1.00[ASW][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571228	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571242	1.00[AMR][1000 genomes]
rs11571262	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571277	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11604594	1.00[CHD][hapmap]
rs17096184	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2020879	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2124761	1.00[TSI][hapmap]
rs56935038	1.00[AMR][1000 genomes]
rs57770872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018759	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59891301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965911	0.93[AFR][1000 genomes]
rs61493400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590838	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112977	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128626	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100954400-100967200	Weak transcription	Aorta	Aorta
3	chr11:100959600-100971000	Weak transcription	Fetal Lung	lung
4	chr11:100961600-100966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr11:100962800-100970200	Weak transcription	Right Atrium	heart
6	chr11:100963200-100967000	Weak transcription	Hela-S3	cervix
7	chr11:100964400-100967000	Weak transcription	Ovary	ovary

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