Variant report

Variant	rs11571242
Chromosome Location	chr11:100920246-100920247
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs11224544	0.83[EUR][1000 genomes]
rs11224551	0.83[EUR][1000 genomes]
rs11224553	0.83[EUR][1000 genomes]
rs11224555	0.83[EUR][1000 genomes]
rs11571138	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571228	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571240	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571262	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12292475	0.83[EUR][1000 genomes]
rs13377359	0.83[EUR][1000 genomes]
rs17096184	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2020879	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2124761	1.00[EUR][1000 genomes]
rs4363557	1.00[EUR][1000 genomes]
rs56935038	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57770872	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58018759	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59891301	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965911	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs61493400	1.00[AMR][1000 genomes]
rs6590836	0.83[EUR][1000 genomes]
rs6590837	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590838	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7112977	1.00[AMR][1000 genomes]
rs7113269	1.00[AMR][1000 genomes]
rs7128626	1.00[AMR][1000 genomes]
rs73573637	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7928290	1.00[AMR][1000 genomes]
rs7943356	0.83[EUR][1000 genomes]
rs7943946	1.00[AMR][1000 genomes]
rs7944104	0.83[EUR][1000 genomes]
rs7944354	0.83[EUR][1000 genomes]
rs9804456	0.83[EUR][1000 genomes]
rs9804484	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905200-100935800	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
3	chr11:100914400-100935600	Weak transcription	Aorta	Aorta
4	chr11:100918400-100920600	Weak transcription	Adipose Nuclei	Adipose
5	chr11:100918600-100920800	Enhancers	K562	blood
6	chr11:100918800-100930800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:100919000-100920800	Strong transcription	Ovary	ovary
8	chr11:100920000-100920400	Strong transcription	Fetal Lung	lung

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