Variant report

No.	Distal block	Cell Line	Cell type
1	chr11:100880842..100882974-chr11:100883721..100885430,2	MCF-7	breast:
2	chr11:100875993..100877986-chr11:100880784..100883250,2	MCF-7	breast:
3	chr11:100877145..100879393-chr11:100879785..100882124,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11224544	1.00[EUR][1000 genomes]
rs11224551	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224553	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11224555	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11571228	0.83[EUR][1000 genomes]
rs11571240	0.83[EUR][1000 genomes]
rs11571242	0.83[EUR][1000 genomes]
rs11571262	0.83[EUR][1000 genomes]
rs11571277	0.83[EUR][1000 genomes]
rs12292475	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13377359	1.00[EUR][1000 genomes]
rs17096184	0.83[EUR][1000 genomes]
rs2020879	0.83[EUR][1000 genomes]
rs2124761	0.83[EUR][1000 genomes]
rs4363557	0.83[EUR][1000 genomes]
rs56935038	0.83[EUR][1000 genomes]
rs57770872	0.83[EUR][1000 genomes]
rs6590836	1.00[EUR][1000 genomes]
rs6590837	0.83[EUR][1000 genomes]
rs6590838	0.83[EUR][1000 genomes]
rs7943356	1.00[EUR][1000 genomes]
rs7944104	1.00[EUR][1000 genomes]
rs7944354	1.00[EUR][1000 genomes]
rs9804484	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1036546	chr11:100869056-100893542	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100878600-100882000	Enhancers	Primary B cells from peripheral blood	blood
2	chr11:100880200-100885600	Weak transcription	K562	blood
3	chr11:100881400-100882200	Enhancers	NH-A	brain
4	chr11:100881600-100882200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr11:100881600-100882200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr11:100881600-100882200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:100881800-100882200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:100881800-100882200	Enhancers	HUES48 Cell Line	embryonic stem cell

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