Variant report
| Variant | rs7943356 |
|---|---|
| Chromosome Location | chr11:100873526-100873527 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000082175 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs11224544 | 1.00[EUR][1000 genomes] |
| rs11224551 | 1.00[EUR][1000 genomes] |
| rs11224553 | 1.00[EUR][1000 genomes] |
| rs11224555 | 1.00[EUR][1000 genomes] |
| rs11571228 | 0.83[EUR][1000 genomes] |
| rs11571240 | 0.83[EUR][1000 genomes] |
| rs11571242 | 0.83[EUR][1000 genomes] |
| rs11571262 | 0.83[EUR][1000 genomes] |
| rs11571277 | 0.83[EUR][1000 genomes] |
| rs12292475 | 1.00[EUR][1000 genomes] |
| rs13377359 | 1.00[EUR][1000 genomes] |
| rs17096184 | 0.83[EUR][1000 genomes] |
| rs2020879 | 0.83[EUR][1000 genomes] |
| rs2124761 | 0.83[EUR][1000 genomes] |
| rs4363557 | 0.83[EUR][1000 genomes] |
| rs56935038 | 0.83[EUR][1000 genomes] |
| rs57770872 | 0.83[EUR][1000 genomes] |
| rs6590836 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6590837 | 0.83[EUR][1000 genomes] |
| rs6590838 | 0.83[EUR][1000 genomes] |
| rs7944104 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7944354 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9804456 | 1.00[EUR][1000 genomes] |
| rs9804484 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048356 | chr11:100713096-101058995 | Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv541154 | chr11:100713096-101058995 | Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
| 3 | nsv518618 | chr11:100868646-100874319 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv522843 | chr11:100868961-100878498 | Enhancers Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1036546 | chr11:100869056-100893542 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| 6 | nsv517236 | chr11:100870494-100874319 | Enhancers | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
