Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100961948..100963629-chr11:100991908..100994772,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11571138	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571228	0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571240	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571242	1.00[AMR][1000 genomes]
rs11571262	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11571277	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17096184	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2020879	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56935038	1.00[AMR][1000 genomes]
rs57770872	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58018759	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59891301	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59965911	0.93[AFR][1000 genomes]
rs61493400	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6590837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6590838	0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7113269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7128626	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73573637	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7928290	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100905400-100997600	Weak transcription	Left Ventricle	heart
2	chr11:100954400-100967200	Weak transcription	Aorta	Aorta
3	chr11:100959200-100964200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr11:100959600-100971000	Weak transcription	Fetal Lung	lung
5	chr11:100961200-100963200	Enhancers	Hela-S3	cervix
6	chr11:100961400-100964200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr11:100961600-100966600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:100962800-100963800	Weak transcription	Ovary	ovary
9	chr11:100962800-100970200	Weak transcription	Right Atrium	heart

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