Variant report
| Variant | rs12327508 |
|---|---|
| Chromosome Location | chr18:45223480-45223481 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11877848 | 1.00[EUR][1000 genomes] |
| rs12968971 | 1.00[EUR][1000 genomes] |
| rs12969668 | 1.00[EUR][1000 genomes] |
| rs16957829 | 1.00[EUR][1000 genomes] |
| rs16957841 | 1.00[EUR][1000 genomes] |
| rs28455633 | 1.00[EUR][1000 genomes] |
| rs28683114 | 1.00[EUR][1000 genomes] |
| rs28769310 | 1.00[EUR][1000 genomes] |
| rs6507788 | 1.00[EUR][1000 genomes] |
| rs7235743 | 1.00[EUR][1000 genomes] |
| rs8083042 | 1.00[EUR][1000 genomes] |
| rs8084338 | 1.00[EUR][1000 genomes] |
| rs8085921 | 1.00[EUR][1000 genomes] |
| rs8087218 | 1.00[EUR][1000 genomes] |
| rs9945033 | 1.00[EUR][1000 genomes] |
| rs9947563 | 1.00[EUR][1000 genomes] |
| rs9952115 | 1.00[EUR][1000 genomes] |
| rs9952878 | 1.00[EUR][1000 genomes] |
| rs9960371 | 1.00[EUR][1000 genomes] |
| rs9962367 | 1.00[EUR][1000 genomes] |
| rs9965552 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv2286 | chr18:45181897-45226628 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv3425854 | chr18:45188942-45336590 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv576823 | chr18:45207893-45264035 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv3498044 | chr18:45223367-45223543 | Enhancers | n/a | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45223400-45223600 | Enhancers | Gastric | stomach |
