Variant report

Variant	rs12968971
Chromosome Location	chr18:45411571-45411572
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11872548	1.00[AMR][1000 genomes]
rs11875051	1.00[AMR][1000 genomes]
rs11875783	1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12327508	1.00[EUR][1000 genomes]
rs12969668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957829	1.00[EUR][1000 genomes]
rs16957841	1.00[EUR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28622478	1.00[AMR][1000 genomes]
rs28683114	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28769310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7228619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7235743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7240327	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953631	1.00[AMR][1000 genomes]
rs73953632	1.00[AMR][1000 genomes]
rs73953633	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8084338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085921	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8087218	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092786	1.00[EUR][1000 genomes]
rs8096366	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8098860	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945033	1.00[EUR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947563	1.00[EUR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952992	1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960371	1.00[EUR][1000 genomes]
rs9962367	1.00[EUR][1000 genomes]
rs9965552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
2	chr18:45384200-45421200	Weak transcription	Gastric	stomach
3	chr18:45384200-45423000	Weak transcription	Lung	lung
4	chr18:45384400-45419600	Weak transcription	K562	blood
5	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
6	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
7	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
8	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
10	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
11	chr18:45390600-45419600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr18:45391000-45418400	Weak transcription	HUVEC	blood vessel
13	chr18:45391200-45416400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:45394600-45414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:45395400-45420800	Weak transcription	Fetal Brain Female	brain
16	chr18:45396000-45418800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr18:45396200-45413400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr18:45397000-45430600	Weak transcription	Brain Angular Gyrus	brain
19	chr18:45398200-45420400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr18:45398400-45414400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr18:45399200-45413400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr18:45399200-45420600	Weak transcription	Pancreas	Pancrea
23	chr18:45399600-45411600	Weak transcription	Fetal Intestine Small	intestine
24	chr18:45399600-45413600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr18:45399600-45419000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr18:45400400-45432200	Weak transcription	Ovary	ovary
27	chr18:45400600-45424600	Weak transcription	Stomach Mucosa	stomach
28	chr18:45401200-45426000	Weak transcription	Brain Cingulate Gyrus	brain
29	chr18:45401400-45420600	Weak transcription	Brain Anterior Caudate	brain
30	chr18:45401400-45424600	Weak transcription	Brain Hippocampus Middle	brain
31	chr18:45401600-45421400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr18:45401600-45423400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr18:45403800-45422200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr18:45404800-45417800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr18:45404800-45418000	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr18:45405200-45423400	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr18:45406800-45414000	Strong transcription	Fetal Thymus	thymus
38	chr18:45407400-45420600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr18:45407600-45413400	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr18:45407600-45421000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr18:45407800-45412600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr18:45407800-45420000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr18:45408200-45411600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr18:45408400-45414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr18:45408400-45415400	Weak transcription	Fetal Lung	lung
46	chr18:45408600-45411600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr18:45408800-45412000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr18:45408800-45413000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr18:45408800-45413400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr18:45408800-45420400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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