Variant report

Variant	rs73953633
Chromosome Location	chr18:45500336-45500337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45456840..45458712-chr18:45498629..45500874,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11872548	1.00[AMR][1000 genomes]
rs11875051	1.00[AMR][1000 genomes]
rs11875783	1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes]
rs12968971	1.00[AMR][1000 genomes]
rs12969668	1.00[AMR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28576508	1.00[AMR][1000 genomes]
rs28622478	1.00[AMR][1000 genomes]
rs28683114	1.00[AMR][1000 genomes]
rs28769310	1.00[AMR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	1.00[AMR][1000 genomes]
rs7228619	1.00[AMR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes]
rs7235743	1.00[AMR][1000 genomes]
rs7240327	1.00[AMR][1000 genomes]
rs73953631	1.00[AMR][1000 genomes]
rs73953632	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes]
rs8084338	1.00[AMR][1000 genomes]
rs8085805	1.00[AMR][1000 genomes]
rs8085921	1.00[AMR][1000 genomes]
rs8087218	1.00[AMR][1000 genomes]
rs8096366	1.00[AMR][1000 genomes]
rs8098860	1.00[AMR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	1.00[AMR][1000 genomes]
rs9952878	1.00[AMR][1000 genomes]
rs9952992	1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	1.00[AMR][1000 genomes]
rs9965552	1.00[AMR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45495400-45501600	Weak transcription	Placenta	Placenta
2	chr18:45498000-45500400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr18:45498000-45502200	Weak transcription	Hela-S3	cervix
4	chr18:45498000-45502800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:45498800-45502600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr18:45498800-45502600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr18:45499000-45500400	Enhancers	Ovary	ovary
8	chr18:45499000-45503400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr18:45499600-45500400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr18:45500000-45501000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr18:45500000-45501000	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr18:45500000-45501200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr18:45500000-45501400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:45500000-45501400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr18:45500000-45502000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr18:45500000-45502200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr18:45500200-45501000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr18:45500200-45501000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr18:45500200-45501600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:45500200-45503000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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