Variant report

Variant	rs8098860
Chromosome Location	chr18:45427343-45427344
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45425101..45428042-chr18:45452196..45454277,2	MCF-7	breast:
2	chr18:45424599..45427357-chr18:45454563..45456845,2	K562	blood:
3	chr18:45422809..45427886-chr18:45455832..45459212,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11872548	1.00[AMR][1000 genomes]
rs11875051	1.00[AMR][1000 genomes]
rs11875783	1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12968971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12969668	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957829	1.00[EUR][1000 genomes]
rs16957841	1.00[EUR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28622478	1.00[AMR][1000 genomes]
rs28683114	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28769310	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7228619	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7235743	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7240327	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953631	1.00[AMR][1000 genomes]
rs73953632	1.00[AMR][1000 genomes]
rs73953633	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8084338	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085805	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085921	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8087218	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092786	1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs8096366	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945033	1.00[EUR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947563	1.00[EUR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952878	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952992	1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960371	1.00[EUR][1000 genomes]
rs9962367	1.00[EUR][1000 genomes]
rs9965552	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909614	chr18:45419421-45478490	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45397000-45430600	Weak transcription	Brain Angular Gyrus	brain
2	chr18:45400400-45432200	Weak transcription	Ovary	ovary
3	chr18:45410800-45428000	Weak transcription	Aorta	Aorta
4	chr18:45418200-45428400	Weak transcription	Thymus	Thymus
5	chr18:45419600-45428000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr18:45420800-45433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr18:45420800-45439600	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr18:45421000-45430600	Weak transcription	Right Ventricle	heart
9	chr18:45421200-45436800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr18:45421800-45428000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr18:45421800-45428400	Weak transcription	Psoas Muscle	Psoas
12	chr18:45421800-45430400	Weak transcription	Esophagus	oesophagus
13	chr18:45421800-45430600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr18:45421800-45437800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr18:45422200-45429200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr18:45422200-45430600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr18:45423000-45430600	Weak transcription	NHLF	lung
18	chr18:45423000-45432800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr18:45423200-45427600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr18:45423200-45428000	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr18:45423200-45428000	Weak transcription	Fetal Thymus	thymus
22	chr18:45423200-45428000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr18:45423200-45428400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr18:45423200-45428400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr18:45423200-45428400	Weak transcription	Spleen	Spleen
26	chr18:45423200-45429000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr18:45423200-45429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr18:45423200-45429200	Weak transcription	Right Atrium	heart
29	chr18:45423200-45429200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr18:45423200-45430000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr18:45423200-45430600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr18:45423200-45430600	Weak transcription	Left Ventricle	heart
33	chr18:45423200-45430600	Weak transcription	Lung	lung
34	chr18:45423200-45430600	Weak transcription	Pancreas	Pancrea
35	chr18:45423200-45430600	Weak transcription	HSMM	muscle
36	chr18:45423200-45432800	Weak transcription	Duodenum Mucosa	Duodenum
37	chr18:45423200-45438200	Weak transcription	Gastric	stomach
38	chr18:45423200-45451400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr18:45423400-45427600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr18:45423400-45427600	Weak transcription	Monocytes-CD14+_RO01746	blood
41	chr18:45423400-45428400	Weak transcription	Fetal Intestine Large	intestine
42	chr18:45423400-45428400	Weak transcription	Placenta	Placenta
43	chr18:45423600-45427600	Weak transcription	Primary monocytes fromperipheralblood	blood
44	chr18:45423800-45427600	Enhancers	Primary T cells from cord blood	blood
45	chr18:45424600-45431600	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr18:45424800-45431000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
47	chr18:45424800-45433000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr18:45425000-45427800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr18:45425000-45428000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
50	chr18:45425000-45428000	Weak transcription	Adipose Nuclei	Adipose

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