Variant report

Variant	rs73953632
Chromosome Location	chr18:45497485-45497486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45495428..45497776-chr18:45515164..45517181,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11872548	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875051	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875783	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes]
rs12968971	1.00[AMR][1000 genomes]
rs12969668	1.00[AMR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28576508	1.00[AMR][1000 genomes]
rs28622478	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28683114	1.00[AMR][1000 genomes]
rs28769310	1.00[AMR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	1.00[AMR][1000 genomes]
rs7228619	1.00[AMR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes]
rs7235743	1.00[AMR][1000 genomes]
rs7240327	1.00[AMR][1000 genomes]
rs73953631	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953633	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes]
rs8084338	1.00[AMR][1000 genomes]
rs8085805	1.00[AMR][1000 genomes]
rs8085921	1.00[AMR][1000 genomes]
rs8087218	1.00[AMR][1000 genomes]
rs8096366	1.00[AMR][1000 genomes]
rs8098860	1.00[AMR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	1.00[AMR][1000 genomes]
rs9952878	1.00[AMR][1000 genomes]
rs9952992	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	1.00[AMR][1000 genomes]
rs9965552	1.00[AMR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45494400-45498200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr18:45494600-45499000	Weak transcription	Ovary	ovary
3	chr18:45495200-45497800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr18:45495200-45498000	Enhancers	Hela-S3	cervix
5	chr18:45495400-45497600	Enhancers	A549	lung
6	chr18:45495400-45498800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr18:45495400-45501600	Weak transcription	Placenta	Placenta
8	chr18:45495800-45498400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr18:45495800-45498800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr18:45495800-45498800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr18:45495800-45499000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr18:45496000-45497600	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr18:45496000-45498800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:45496000-45498800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr18:45496000-45499600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr18:45496000-45499600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:45496200-45498000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr18:45496200-45498800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr18:45496200-45499600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr18:45496400-45498200	Enhancers	K562	blood
21	chr18:45496400-45499000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr18:45496800-45497800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr18:45496800-45498000	Enhancers	Primary B cells from peripheral blood	blood
24	chr18:45496800-45498000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr18:45496800-45498200	Enhancers	Primary hematopoietic stem cells	blood
26	chr18:45497000-45497800	Enhancers	GM12878-XiMat	blood
27	chr18:45497000-45498000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr18:45497000-45498000	Enhancers	Primary neutrophils fromperipheralblood	blood
29	chr18:45497000-45498000	Enhancers	Primary B cells from cord blood	blood
30	chr18:45497200-45497800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr18:45497200-45497800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr18:45497200-45498200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr18:45497200-45498200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr18:45497400-45498000	Enhancers	Fetal Heart	heart

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