Variant report

Variant	rs7235743
Chromosome Location	chr18:45410473-45410474
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr18:45410335-45410717	MCF10A-Er-Src	breast:	n/a	n/a
2	FOS	chr18:45410406-45410606	MCF10A-Er-Src	breast:	n/a	n/a
3	MYC	chr18:45410392-45410758	MCF10A-Er-Src	breast:	n/a	n/a
4	FOS	chr18:45410314-45410820	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr18:45410357-45410708	MCF10A-Er-Src	breast:	n/a	n/a
6	STAT3	chr18:45410273-45410633	MCF10A-Er-Src	breast:	n/a	n/a
7	JUND	chr18:45410448-45410747	HepG2	liver:	n/a	n/a
8	KAP1	chr18:45410426-45410768	U2OS	brain:	n/a	n/a
9	E2F4	chr18:45410401-45410601	MCF10A-Er-Src	breast:	n/a	n/a
10	JUN	chr18:45410410-45410664	HepG2	liver:	n/a	chr18:45410563-45410576

Variant related genes	Relation type
ENSG00000269365	TF binding region

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11872548	1.00[AMR][1000 genomes]
rs11875051	1.00[AMR][1000 genomes]
rs11875783	1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12327508	1.00[EUR][1000 genomes]
rs12968971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12969668	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16957829	1.00[EUR][1000 genomes]
rs16957841	1.00[EUR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28622478	1.00[AMR][1000 genomes]
rs28683114	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28769310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	0.87[LWK][hapmap];1.00[MKK][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7228619	0.87[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7240327	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73953631	1.00[AMR][1000 genomes]
rs73953632	1.00[AMR][1000 genomes]
rs73953633	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8084338	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8085921	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8087218	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8092786	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs8096366	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8098860	1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9945033	1.00[EUR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9947563	1.00[EUR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952878	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9952992	1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9960371	1.00[EUR][1000 genomes]
rs9962367	1.00[EUR][1000 genomes]
rs9965552	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057028	chr18:45384301-45410482	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1064124	chr18:45387616-45410760	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv960228	chr18:45401994-45411054	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45382200-45420400	Weak transcription	Right Ventricle	heart
2	chr18:45384200-45421200	Weak transcription	Gastric	stomach
3	chr18:45384200-45423000	Weak transcription	Lung	lung
4	chr18:45384400-45419600	Weak transcription	K562	blood
5	chr18:45384400-45423000	Weak transcription	Spleen	Spleen
6	chr18:45384800-45418400	Weak transcription	Fetal Brain Male	brain
7	chr18:45385600-45420800	Weak transcription	Brain Germinal Matrix	brain
8	chr18:45386800-45420400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:45386800-45420600	Weak transcription	Esophagus	oesophagus
10	chr18:45390000-45413600	Weak transcription	Fetal Heart	heart
11	chr18:45390600-45419600	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr18:45391000-45418400	Weak transcription	HUVEC	blood vessel
13	chr18:45391200-45416400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr18:45394600-45414000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr18:45395400-45420800	Weak transcription	Fetal Brain Female	brain
16	chr18:45396000-45418800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr18:45396200-45413400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr18:45397000-45430600	Weak transcription	Brain Angular Gyrus	brain
19	chr18:45398200-45420400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr18:45398400-45414400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr18:45399200-45413400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr18:45399200-45420600	Weak transcription	Pancreas	Pancrea
23	chr18:45399600-45411600	Weak transcription	Fetal Intestine Small	intestine
24	chr18:45399600-45413600	Weak transcription	Fetal Muscle Trunk	muscle
25	chr18:45399600-45419000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr18:45400400-45432200	Weak transcription	Ovary	ovary
27	chr18:45400600-45410600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr18:45400600-45424600	Weak transcription	Stomach Mucosa	stomach
29	chr18:45401200-45426000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr18:45401400-45420600	Weak transcription	Brain Anterior Caudate	brain
31	chr18:45401400-45424600	Weak transcription	Brain Hippocampus Middle	brain
32	chr18:45401600-45421400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr18:45401600-45423400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr18:45403000-45411200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
35	chr18:45403800-45422200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr18:45404800-45417800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr18:45404800-45418000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr18:45405200-45423400	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr18:45405400-45411000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr18:45405800-45411000	Strong transcription	HUES64 Cell Line	embryonic stem cell
41	chr18:45406000-45410800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr18:45406600-45411000	Strong transcription	Dnd41	blood
43	chr18:45406800-45414000	Strong transcription	Fetal Thymus	thymus
44	chr18:45407000-45410800	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr18:45407400-45420600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr18:45407600-45411000	Enhancers	Muscle Satellite Cultured Cells	--
47	chr18:45407600-45413400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr18:45407600-45421000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr18:45407800-45411000	Enhancers	Osteobl	bone
50	chr18:45407800-45412600	Weak transcription	Primary hematopoietic stem cells	blood

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