Variant report

Variant	rs73953631
Chromosome Location	chr18:45495151-45495152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45490600..45492512-chr18:45494692..45496408,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11872548	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875051	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11875783	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11877848	1.00[AMR][1000 genomes]
rs12968971	1.00[AMR][1000 genomes]
rs12969668	1.00[AMR][1000 genomes]
rs28455633	1.00[AMR][1000 genomes]
rs28465195	1.00[AMR][1000 genomes]
rs28622478	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28683114	1.00[AMR][1000 genomes]
rs28769310	1.00[AMR][1000 genomes]
rs61238329	1.00[AMR][1000 genomes]
rs6507788	1.00[AMR][1000 genomes]
rs7228619	1.00[AMR][1000 genomes]
rs7233149	1.00[AMR][1000 genomes]
rs7235743	1.00[AMR][1000 genomes]
rs7240327	1.00[AMR][1000 genomes]
rs73953632	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73953633	1.00[AMR][1000 genomes]
rs8083042	1.00[AMR][1000 genomes]
rs8084338	1.00[AMR][1000 genomes]
rs8085805	1.00[AMR][1000 genomes]
rs8085921	1.00[AMR][1000 genomes]
rs8087218	1.00[AMR][1000 genomes]
rs8096366	1.00[AMR][1000 genomes]
rs8098860	1.00[AMR][1000 genomes]
rs9947095	1.00[AMR][1000 genomes]
rs9947712	1.00[AMR][1000 genomes]
rs9951883	1.00[AMR][1000 genomes]
rs9952115	1.00[AMR][1000 genomes]
rs9952878	1.00[AMR][1000 genomes]
rs9952992	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9957678	1.00[AMR][1000 genomes]
rs9958863	1.00[AMR][1000 genomes]
rs9965552	1.00[AMR][1000 genomes]
rs9965717	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45493200-45495200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr18:45494000-45495200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr18:45494000-45495200	Flanking Active TSS	Hela-S3	cervix
4	chr18:45494000-45495400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:45494000-45496000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr18:45494000-45496000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr18:45494200-45495400	Enhancers	Placenta	Placenta
8	chr18:45494200-45495400	Flanking Active TSS	A549	lung
9	chr18:45494200-45496200	Enhancers	H9 Cell Line	embryonic stem cell
10	chr18:45494200-45496600	Enhancers	HSMM	muscle
11	chr18:45494400-45495800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr18:45494400-45495800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr18:45494400-45496400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr18:45494400-45498200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr18:45494600-45495200	Flanking Active TSS	HSMMtube	muscle
16	chr18:45494600-45495200	Flanking Active TSS	NH-A	brain
17	chr18:45494600-45495600	Enhancers	Osteobl	bone
18	chr18:45494600-45495800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr18:45494600-45495800	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr18:45494600-45496200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr18:45494600-45499000	Weak transcription	Ovary	ovary
22	chr18:45494800-45495200	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr18:45494800-45495200	Enhancers	Aorta	Aorta
24	chr18:45494800-45495400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr18:45494800-45495400	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr18:45494800-45495400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr18:45494800-45495400	Enhancers	Placenta Amnion	Placenta Amnion
28	chr18:45494800-45496000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr18:45494800-45497400	Weak transcription	Fetal Heart	heart
30	chr18:45495000-45495800	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr18:45495000-45495800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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