Variant report
| Variant | rs16957841 |
|---|---|
| Chromosome Location | chr18:45267044-45267045 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr18:45261310..45263044-chr18:45265951..45268063,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs11877848 | 1.00[EUR][1000 genomes] |
| rs12327508 | 1.00[EUR][1000 genomes] |
| rs12968971 | 1.00[EUR][1000 genomes] |
| rs12969668 | 1.00[EUR][1000 genomes] |
| rs16957829 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs28455633 | 1.00[EUR][1000 genomes] |
| rs28683114 | 1.00[EUR][1000 genomes] |
| rs28769310 | 1.00[EUR][1000 genomes] |
| rs56664699 | 1.00[ASN][1000 genomes] |
| rs6507788 | 1.00[EUR][1000 genomes] |
| rs7228619 | 1.00[EUR][1000 genomes] |
| rs7233149 | 1.00[EUR][1000 genomes] |
| rs7235743 | 1.00[EUR][1000 genomes] |
| rs7240327 | 1.00[EUR][1000 genomes] |
| rs8083042 | 1.00[EUR][1000 genomes] |
| rs8084338 | 1.00[EUR][1000 genomes] |
| rs8085805 | 1.00[EUR][1000 genomes] |
| rs8085921 | 1.00[EUR][1000 genomes] |
| rs8087218 | 1.00[EUR][1000 genomes] |
| rs8092786 | 1.00[EUR][1000 genomes] |
| rs8096366 | 1.00[EUR][1000 genomes] |
| rs8098860 | 1.00[EUR][1000 genomes] |
| rs9945033 | 1.00[EUR][1000 genomes] |
| rs9947095 | 1.00[EUR][1000 genomes] |
| rs9947563 | 1.00[EUR][1000 genomes] |
| rs9952115 | 1.00[EUR][1000 genomes] |
| rs9952878 | 1.00[EUR][1000 genomes] |
| rs9958863 | 1.00[EUR][1000 genomes] |
| rs9960371 | 1.00[EUR][1000 genomes] |
| rs9962367 | 1.00[EUR][1000 genomes] |
| rs9965552 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3425854 | chr18:45188942-45336590 | Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:45264600-45274800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
